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MZ422438.1__QXN67883.1__FPHOBKDP_00129__00129
Bact-VirMZ422438.1__QXN67883.1__FPHOBKDP_00129__00129
Identity
- Accession:
- MZ422438 ↗
- Kingdom:
- phage
Quality
62.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-121
D2
medium
residues 133-230
Domain cluster:
rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00729__D1-88
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01471.24 best | PG_binding_1 | 44.1 | 2.60e-11 | 59.2% | 93.0% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bkhA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.89 | 64.0 | 6.89e-01 | 83.7% | 84.9% |
| 4g54A02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.87 | 62.0 | 7.15e-01 | 82.7% | 98.6% |
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.87 | 67.0 | 7.18e-01 | 88.8% | 91.8% |
| 1lbuA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.76 | 61.0 | 6.55e-01 | 85.7% | 97.6% |
| 3d2yA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.71 | 50.0 | 5.37e-01 | 83.7% | 84.5% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1498420 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.93 | 65.0 | 7.40e-01 | 77.6% | 92.1% |
| 3959835 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.92 | 64.0 | 7.57e-01 | 78.6% | 100.0% |
| 3263339 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.90 | 66.0 | 7.58e-01 | 75.5% | 100.0% |
| 2859574 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.90 | 59.0 | 6.86e-01 | 75.5% | 91.5% |
| 4312892 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.89 | 54.0 | 6.91e-01 | 93.9% | 100.0% |
| 3957237 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.88 | 62.0 | 7.08e-01 | 71.4% | 100.0% |
| 3955223 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.88 | 64.0 | 7.09e-01 | 74.5% | 98.8% |
| 224034 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.88 | 61.0 | 6.72e-01 | 81.6% | 86.4% |
| 4055540 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.87 | 54.0 | 6.43e-01 | 81.6% | 89.9% |
| 4032027 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.87 | 68.0 | 7.29e-01 | 88.8% | 92.9% |
| 1165079 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.86 | 67.0 | 6.78e-01 | 88.8% | 81.2% |
| 3356981 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.86 | 64.0 | 7.04e-01 | 76.5% | 93.8% |
| 1877329 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.86 | 54.0 | 6.14e-01 | 74.5% | 82.9% |
| 4380775 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.84 | 56.0 | 4.32e-01 | 98.0% | 33.5% |
| 4173379 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.84 | 64.0 | 7.09e-01 | 84.7% | 97.5% |
| 3291401 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 69.0 | 7.40e-01 | 95.9% | 100.0% |
| 3060287 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.83 | 53.0 | 6.04e-01 | 73.5% | 85.3% |
| 4473649 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 67.0 | 7.16e-01 | 85.7% | 96.5% |
| 4096813 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 70.0 | 6.98e-01 | 88.8% | 99.0% |
| 3946056 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 57.0 | 5.54e-01 | 85.7% | 64.8% |
| 4010440 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 59.0 | 6.70e-01 | 85.7% | 97.3% |
| 5019285 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 68.0 | 6.98e-01 | 87.8% | 89.5% |
| 3589440 | 144.1.1.7 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PF30262 | 0.80 | 69.0 | 5.98e-01 | 89.8% | 87.1% |
| 3772398 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 53.0 | 5.82e-01 | 73.5% | 82.5% |
| 3302194 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 66.0 | 6.78e-01 | 88.8% | 93.7% |
| 3319740 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 62.0 | 6.66e-01 | 85.7% | 95.3% |
| 3539881 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 54.0 | 6.14e-01 | 80.6% | 92.0% |
| 3275963 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 66.0 | 6.93e-01 | 88.8% | 100.0% |
| 1904136 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.78 | 52.0 | 5.92e-01 | 72.4% | 89.3% |
| 3299934 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 66.0 | 6.44e-01 | 88.8% | 85.7% |
| 3930763 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 52.0 | 5.98e-01 | 82.7% | 90.7% |
| 3332533 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 63.0 | 6.27e-01 | 85.7% | 96.0% |
| 3395 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.76 | 61.0 | 6.57e-01 | 85.7% | 97.6% |
| 3933825 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.76 | 51.0 | 5.73e-01 | 83.7% | 89.3% |
| 3772718 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 51.0 | 5.49e-01 | 89.8% | 80.0% |
| 3201809 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.75 | 57.0 | 6.27e-01 | 82.7% | 97.5% |
| 3247155 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 47.0 | 5.52e-01 | 75.5% | 93.8% |
| 4321110 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.75 | 51.0 | 5.73e-01 | 88.8% | 90.7% |
| 4160453 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 48.0 | 5.63e-01 | 88.8% | 91.4% |
| 1934000 | 144.1.1.2 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1,PG_binding_5 | 0.74 | 70.0 | 5.86e-01 | 100.0% | 77.8% |
| 2819638 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.74 | 60.0 | 5.66e-01 | 88.8% | 72.4% |
| 4262263 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.73 | 48.0 | 5.44e-01 | 77.6% | 88.0% |
| 3765966 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.73 | 51.0 | 5.48e-01 | 78.6% | 83.5% |
| 3537259 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.72 | 51.0 | 5.65e-01 | 86.7% | 90.0% |
| 3221065 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.72 | 51.0 | 5.82e-01 | 83.7% | 96.0% |
| 3764906 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.71 | 51.0 | 5.59e-01 | 100.0% | 90.0% |
| 4857662 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.71 | 45.0 | 5.22e-01 | 87.8% | 88.7% |
| 3222017 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.69 | 53.0 | 5.52e-01 | 81.6% | 86.7% |
| 3621525 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.64 | 47.0 | 5.34e-01 | 83.7% | 98.7% |
| 3244024 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 42.0 | 4.32e-01 | 83.7% | 78.9% |
| 2756454 | 235.1.1.13 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 | 0.57 | 40.0 | 3.32e-01 | 72.4% | 50.0% |