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MZ422438.1__QXN67926.1__FPHOBKDP_00176__00172

Bact-Vir

MZ422438.1__QXN67926.1__FPHOBKDP_00176__00172

Identity

Accession:
MZ422438 ↗
Kingdom:
phage

Quality

91.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_LPJP1

TaxID: 2852115

Cluster

View cluster (36 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-94
PDB
Domain cluster: rep: MK504444.1__QBJ03634.1__UCC3521_0096__00096__D7-98
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00216.27 best Bac_DNA_binding 27.5 4.10e-06 98.9% 94.4%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2np2A00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.73 65.0 6.29e-01 100.0% 92.2%
4pt4B00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.72 61.0 5.98e-01 100.0% 86.6%
1owfA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.69 62.0 6.06e-01 100.0% 92.7%
2ndpA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.67 58.0 5.70e-01 100.0% 88.9%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.67 56.0 5.75e-01 98.9% 93.2%
4n1vA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.66 56.0 5.61e-01 97.8% 93.5%
2iieA01 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.66 60.0 5.67e-01 100.0% 85.2%
6lmjB00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.63 55.0 5.37e-01 98.9% 92.9%
1wtuA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.55 49.0 4.81e-01 100.0% 91.9%
1ju2A02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.53 36.0 2.89e-01 71.1% 57.5%
1s4cC00 2.60.120.370 Mainly Beta › Sandwich › Jelly Rolls › YhcH/YjgK/YiaL 0.52 35.0 3.04e-01 70.0% 83.7%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.50 31.0 2.54e-01 80.0% 32.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4284216 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.76 66.0 6.53e-01 100.0% 89.5%
4508411 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.76 66.0 6.40e-01 100.0% 86.0%
3964061 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.75 67.0 6.44e-01 100.0% 88.5%
4051851 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.75 68.0 6.57e-01 100.0% 90.0%
4274974 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.74 64.0 6.25e-01 100.0% 86.0%
4681823 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.74 64.0 6.23e-01 100.0% 86.0%
5073165 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.73 64.0 6.44e-01 100.0% 95.6%
4240651 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.72 63.0 6.09e-01 100.0% 86.0%
222497 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.71 62.0 6.06e-01 100.0% 87.8%
4227571 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.70 62.0 5.99e-01 100.0% 87.0%
4088528 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.70 59.0 5.76e-01 100.0% 83.0%
4108127 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.70 64.0 6.33e-01 100.0% 94.7%
4662987 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.70 63.0 6.18e-01 100.0% 93.7%
1916727 101.17.1.1 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding 0.67 58.0 5.70e-01 100.0% 88.9%
4168202 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.66 58.0 5.76e-01 100.0% 96.8%
3939681 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.55 43.0 3.02e-01 86.7% 45.2%
5077779 2003.1.5.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BpsA_C 0.51 42.0 3.12e-01 94.4% 86.2%