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MZ422438.1__QXN67955.1__FPHOBKDP_00205__00201

Bact-Vir

MZ422438.1__QXN67955.1__FPHOBKDP_00205__00201

Identity

Accession:
MZ422438 ↗
Kingdom:
phage

Quality

71.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Listeria_phage_LPJP1

TaxID: 2852115

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-92
PDB
D2 high residues 249-431
PDB
Domain cluster: rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00078.33 best RVT_1 62.1 9.50e-17 98.4% 81.5%
D3 high residues 437-500
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.64 54.0 5.03e-01 98.4% 83.5%
1s35A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 56.0 4.85e-01 100.0% 93.1%
6xssA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.62 45.0 4.41e-01 96.9% 72.5%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.62 51.0 4.79e-01 98.4% 83.5%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 52.0 4.63e-01 100.0% 88.8%
1owaA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 50.0 4.37e-01 100.0% 88.7%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 41.0 4.05e-01 93.8% 73.1%
4i1mB02 1.25.40.830 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 46.0 3.64e-01 96.9% 87.1%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.56 45.0 3.92e-01 98.4% 92.0%
5tw1D01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.55 38.0 3.04e-01 73.4% 97.9%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.55 38.0 3.18e-01 71.9% 42.9%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.55 39.0 3.16e-01 76.6% 97.7%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 38.0 3.54e-01 73.4% 56.6%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.54 40.0 3.31e-01 79.7% 73.7%
5zr4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.31e-01 78.1% 64.7%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.52 45.0 3.33e-01 98.4% 59.3%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.52 36.0 3.30e-01 75.0% 81.9%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 35.0 3.21e-01 71.9% 87.8%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.51 35.0 2.75e-01 71.9% 79.5%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969009 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 51.0 4.19e-01 96.9% 46.4%
3938350 604.1.1.67 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_5 0.60 52.0 4.50e-01 100.0% 87.6%
3724622 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 49.0 4.98e-01 96.9% 93.8%
3168273 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.58 50.0 5.02e-01 98.4% 100.0%
4977808 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.56 46.0 4.49e-01 92.2% 88.6%
4258385 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.55 35.0 3.32e-01 75.0% 54.7%
3592281 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.55 36.0 3.58e-01 78.1% 64.6%
3709205 2004.1.1.85 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase 0.53 44.0 2.78e-01 92.2% 91.8%
4015114 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.53 43.0 3.72e-01 89.1% 61.0%
135559 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.52 42.0 3.69e-01 92.2% 91.3%
3506153 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.52 37.0 3.35e-01 73.4% 68.7%
3593421 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.52 33.0 2.97e-01 73.4% 45.6%
3269300 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.52 33.0 3.01e-01 73.4% 48.2%
4344838 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.52 33.0 3.11e-01 71.9% 50.0%
3331123 101.35.1.23 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.51 37.0 3.84e-01 85.9% 81.7%
3705890 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.51 39.0 3.44e-01 84.4% 85.3%
3176953 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.50 35.0 3.45e-01 73.4% 92.9%
D4 medium residues 134-203
PDB