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MZ424863.1__QXO10369.1__X__00052

Bact-Vir

MZ424863.1__QXO10369.1__X__00052

Identity

Accession:
MZ424863 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-139
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05037.19 best DUF669 23.4 7.60e-05 92.0% 45.6%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 47.0 5.47e-01 100.0% 98.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 32.0 4.09e-01 100.0% 72.5%
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 38.0 4.75e-01 90.3% 89.7%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 42.0 4.54e-01 100.0% 79.2%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.63 38.0 4.64e-01 100.0% 95.7%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 55.0 5.14e-01 100.0% 76.6%
4owwB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 4.43e-01 100.0% 73.8%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.63 41.0 4.60e-01 100.0% 88.2%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 51.0 5.11e-01 100.0% 87.0%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 4.89e-01 100.0% 90.9%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 40.0 4.24e-01 100.0% 74.8%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 4.30e-01 100.0% 72.4%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 46.0 4.82e-01 100.0% 88.3%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 43.0 4.24e-01 100.0% 68.5%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 45.0 4.76e-01 100.0% 90.8%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 47.0 3.82e-01 100.0% 45.9%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 47.0 4.80e-01 100.0% 87.3%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 4.71e-01 100.0% 100.0%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.58 28.0 3.56e-01 89.4% 79.4%
5b3pA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.58 41.0 3.90e-01 73.5% 91.8%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 4.54e-01 100.0% 86.5%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 35.0 4.01e-01 100.0% 83.3%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.56 39.0 4.34e-01 100.0% 93.3%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 4.36e-01 100.0% 90.2%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 4.14e-01 100.0% 86.7%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 47.0 4.65e-01 96.5% 98.3%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 45.0 4.37e-01 94.7% 99.2%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 43.0 4.13e-01 85.8% 95.3%
1ddgA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 4.44e-01 90.3% 94.7%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 44.0 4.33e-01 92.0% 95.1%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 28.0 3.06e-01 100.0% 60.0%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 44.0 4.28e-01 93.8% 94.3%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 4.16e-01 85.8% 96.4%
5uj1A03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.51 42.0 3.67e-01 91.2% 59.1%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 43.0 3.90e-01 93.8% 91.0%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 43.0 4.41e-01 92.0% 97.2%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4602887 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 46.0 5.47e-01 100.0% 93.2%
3970846 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 44.0 5.12e-01 98.2% 82.5%
4593266 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.74 40.0 4.89e-01 98.2% 81.3%
4930846 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.70 37.0 4.97e-01 94.7% 98.3%
3784708 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.69 45.0 5.08e-01 98.2% 87.1%
3961045 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 46.0 4.85e-01 100.0% 76.0%
5046188 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 43.0 5.14e-01 99.1% 97.3%
4932581 2.1.1.12 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S28e 0.67 37.0 4.76e-01 88.5% 93.8%
3289386 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 44.0 4.90e-01 99.1% 85.2%
3716770 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.67 41.0 4.25e-01 98.2% 65.7%
3909994 2.3.1.1 beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP 0.67 51.0 4.37e-01 100.0% 52.0%
3504767 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.66 32.0 3.90e-01 98.2% 71.4%
5063738 2.1.1.271 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF26390 0.66 46.0 4.66e-01 100.0% 72.7%
3990413 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.65 39.0 4.78e-01 85.0% 95.7%
4927408 2.3.1.0 beta barrels › OB-fold › TIMP-like › TIMP-like 0.65 49.0 4.79e-01 100.0% 73.3%
3285634 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 42.0 4.63e-01 97.3% 81.1%
141178 2.1.1.75 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC13_N 0.64 54.0 4.54e-01 100.0% 52.8%
3955464 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 4.81e-01 100.0% 88.9%
3997678 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 47.0 4.82e-01 100.0% 80.9%
3287532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 4.63e-01 100.0% 81.0%
3931744 2.1.1.141 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › WCOB 0.62 46.0 4.20e-01 100.0% 58.0%
3616990 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 49.0 4.97e-01 100.0% 86.4%
3285635 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 43.0 4.69e-01 100.0% 86.3%
168731 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 40.0 4.32e-01 100.0% 78.6%
3678038 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.60 39.0 4.56e-01 93.8% 98.7%
3870119 2.1.1.119 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.60 44.0 3.94e-01 100.0% 53.3%
3366703 2.1.1.157 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB2 0.60 45.0 4.30e-01 100.0% 67.4%
3520868 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 35.0 3.30e-01 79.6% 47.1%
3650296 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.60 30.0 3.22e-01 100.0% 54.7%
3211785 2.1.1.215 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_1st 0.58 36.0 4.31e-01 99.1% 94.7%
3593482 2.1.1.135 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.58 45.0 4.82e-01 98.2% 94.0%
3297966 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.58 37.0 3.70e-01 75.2% 61.7%
2541776 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.57 44.0 4.55e-01 100.0% 85.3%
3258019 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 44.0 4.05e-01 100.0% 62.0%
3667340 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.57 43.0 4.23e-01 100.0% 73.6%
4940634 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.56 38.0 3.51e-01 82.3% 52.4%
3838752 2.2.1.10 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › DUF1523 0.56 48.0 4.25e-01 100.0% 62.9%
3968190 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 4.62e-01 99.1% 96.8%
3375524 2.1.1.229 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30940 0.56 43.0 4.25e-01 100.0% 76.7%
3279068 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 43.0 4.40e-01 100.0% 82.7%
3659298 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.56 43.0 3.85e-01 100.0% 56.4%
4232994 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.56 44.0 4.54e-01 100.0% 86.4%
3606597 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.56 43.0 3.95e-01 100.0% 63.4%
3657702 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 3.90e-01 100.0% 64.3%
5027780 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.55 30.0 3.93e-01 92.9% 100.0%
3673251 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.54 43.0 3.73e-01 100.0% 54.9%
3716709 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 45.0 4.38e-01 100.0% 81.3%
3516854 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 34.0 3.40e-01 99.1% 60.9%
3406278 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 44.0 4.25e-01 87.6% 81.5%
3636460 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.54 45.0 3.01e-01 88.5% 26.4%
4534466 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.54 36.0 3.92e-01 70.8% 82.1%
1930750 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 45.0 4.08e-01 93.8% 80.0%
4938125 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.53 34.0 3.76e-01 100.0% 84.7%
3594165 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 45.0 3.93e-01 92.0% 67.6%
3903091 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.53 45.0 3.14e-01 95.6% 32.1%
3564807 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 44.0 4.06e-01 94.7% 79.4%
5055376 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 39.0 2.96e-01 78.8% 56.9%
3651207 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.52 39.0 3.07e-01 79.6% 67.3%
3659805 331.3.1.4 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › IP_trans 0.52 41.0 3.11e-01 81.4% 85.5%
3961460 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 44.0 3.99e-01 100.0% 68.0%
4012805 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.52 44.0 4.28e-01 94.7% 90.8%
3718166 2.1.1.105 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › NMD3_OB 0.52 39.0 3.93e-01 100.0% 78.3%
3894481 277.1.1.5 a+b two layers › PX domain › PX domain › PX domain › Vps5 0.52 44.0 3.11e-01 93.8% 34.9%
4072295 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 44.0 3.07e-01 93.8% 32.4%
3513396 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 44.0 3.79e-01 93.8% 74.4%
3283746 330.1.1.16 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF6968 0.52 33.0 3.83e-01 98.2% 91.3%
3841771 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 44.0 4.05e-01 95.6% 83.3%
4028698 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 41.0 4.17e-01 86.7% 92.1%
3632526 206.1.1.82 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF7580 0.50 37.0 2.75e-01 78.8% 61.8%