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MZ427930.2__QWY14767.1__SAP23_GM000030__00030

Bact-Vir

MZ427930.2__QWY14767.1__SAP23_GM000030__00030

Identity

Accession:
MZ427930 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Kayvirus› Staphylococcus_phage_SAP23

TaxID: 2849016

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-63
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.59 49.0 4.69e-01 95.2% 94.7%
2m4mA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 49.0 4.07e-01 100.0% 87.9%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.54 40.0 3.88e-01 85.5% 83.1%
4makB00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.93e-01 85.5% 80.3%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.68e-01 88.7% 84.7%
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 43.0 3.83e-01 96.8% 73.0%
3gd0A01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.53 38.0 2.61e-01 79.0% 46.4%
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.52 42.0 3.49e-01 98.4% 89.4%
1s79A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 42.0 3.67e-01 95.2% 80.6%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.52 37.0 3.61e-01 77.4% 83.1%
2nzcB00 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.51 39.0 3.69e-01 88.7% 93.8%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.51 38.0 3.75e-01 83.9% 98.5%
3zs3A00 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.51 36.0 2.58e-01 77.4% 50.9%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.51 43.0 2.61e-01 100.0% 70.7%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.89e-01 100.0% 96.3%
2iewB00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.51 38.0 2.68e-01 88.7% 49.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989567 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.62 50.0 5.13e-01 88.7% 98.3%
1790206 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.59 45.0 3.57e-01 83.9% 53.3%
3252775 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.57 39.0 3.83e-01 74.2% 84.3%
3287267 304.11.1.1 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Acyl_transf_1 0.55 42.0 4.11e-01 88.7% 84.3%
4017316 304.8.1.10 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.55 47.0 3.47e-01 100.0% 74.9%
3290985 304.169.1.3 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.54 42.0 4.03e-01 90.3% 80.0%
3388053 3253.1.1.1 ↗ a+b two layers › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › ferredoxin-like domain in flagellar biosynthesis protein flhA › FHIPEP 0.54 39.0 4.21e-01 83.9% 100.0%
4065065 304.8.1.24 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 0.52 41.0 4.00e-01 88.7% 90.0%
5031484 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 37.0 3.38e-01 75.8% 64.4%
4955746 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 39.0 3.61e-01 83.9% 75.3%
4992146 304.57.1.0 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.52 43.0 3.94e-01 100.0% 91.1%
4064296 304.24.1.25 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › DUF2129 0.52 42.0 4.07e-01 90.3% 91.4%
4034087 304.8.1.24 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 0.52 40.0 3.86e-01 88.7% 82.7%
5043707 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.51 38.0 3.70e-01 83.9% 97.1%
4157124 304.8.1.24 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF2129 0.51 39.0 3.94e-01 88.7% 95.4%
5271 304.8.1.18 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TM1266-like 0.51 39.0 3.68e-01 87.1% 93.8%
5047831 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.51 42.0 2.92e-01 100.0% 41.9%
5037945 304.8.1.22 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › AHAS-like_ACT 0.51 39.0 3.64e-01 88.7% 88.2%
3998582 3696.1.1.1 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › HARP 0.51 38.0 3.72e-01 83.9% 87.1%
3701635 3696.1.1.0 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related 0.51 39.0 3.48e-01 87.1% 72.6%
4957085 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 38.0 3.83e-01 87.1% 84.6%