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MZ428233.1__QZE50340.1__X__00001

Bact-Vir

MZ428233.1__QZE50340.1__X__00001

Identity

Accession:
MZ428233 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Webervirus› Klebsiella_phage_vB_KpnS-VAC9

TaxID: 2864367

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 88-253
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2nxfA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.70 48.0 3.82e-01 79.5% 37.3%
4jz5A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 41.0 3.81e-01 80.1% 48.1%
3cnyA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.65 44.0 3.63e-01 79.5% 38.5%
3loqA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.64 35.0 3.81e-01 71.1% 61.1%
4wnyA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.63 36.0 3.99e-01 72.3% 68.9%
3itlD00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.62 48.0 3.50e-01 80.7% 31.5%
2qtfA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 37.0 3.74e-01 78.3% 57.5%
3l5lA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 51.0 3.92e-01 86.7% 69.1%
3eypA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 44.0 3.53e-01 80.7% 38.4%
4m8kA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 47.0 4.29e-01 80.1% 82.2%
5t9gB03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 46.0 3.76e-01 80.1% 54.1%
7w6bA01 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.60 46.0 3.87e-01 78.3% 90.9%
1w6uD00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 45.0 3.73e-01 80.1% 60.6%
1b30A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 42.0 3.46e-01 80.7% 41.5%
3ga7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 43.0 3.55e-01 79.5% 63.6%
5xtfA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 44.0 3.91e-01 80.1% 71.9%
4g3hC00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.56 51.0 4.15e-01 100.0% 93.2%
3dcpA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 43.0 3.62e-01 80.7% 61.2%
1ei9A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 43.0 3.64e-01 81.3% 88.5%
3dhuA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 43.0 3.33e-01 81.3% 50.4%
5f7uA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 47.0 3.62e-01 94.6% 74.3%
2w3pA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.54 42.0 3.76e-01 80.7% 72.2%
7zr3A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 41.0 3.36e-01 80.7% 62.3%
3pzlB00 3.40.800.10 Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain 0.53 49.0 4.04e-01 100.0% 81.9%
2deoB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 36.0 3.44e-01 80.7% 58.0%
7wmzC01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.53 49.0 4.08e-01 100.0% 93.3%
6znpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 41.0 3.76e-01 80.1% 68.4%
6j0pA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 41.0 3.56e-01 80.7% 86.9%
5fusA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 40.0 3.70e-01 80.1% 68.8%
4ogcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 37.0 3.52e-01 71.7% 64.8%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.21e-01 88.0% 47.9%
3k4oA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.52 38.0 3.33e-01 75.9% 62.3%
1fj2A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 3.58e-01 80.1% 78.2%
6sj3B01 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.52 39.0 3.19e-01 78.9% 54.7%
3q71A00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 46.0 4.30e-01 95.8% 97.0%
2ohhA02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.52 35.0 3.70e-01 77.7% 77.8%
3h8lA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 34.0 3.52e-01 75.3% 71.5%
4zrmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 39.0 3.66e-01 78.3% 78.1%
5z87B02 3.40.50.1700 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain 0.51 46.0 4.09e-01 97.6% 75.1%
4eziA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 3.29e-01 80.1% 61.7%
4mj3B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 3.24e-01 80.7% 75.2%
4d02A02 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.51 34.0 3.61e-01 78.3% 77.6%
2o2gA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 3.54e-01 79.5% 72.7%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.50 35.0 3.57e-01 70.5% 94.4%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995790 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.86 68.0 5.51e-01 80.7% 53.9%
4979529 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.76 48.0 3.97e-01 80.1% 37.8%
4198344 2495.1.1.2 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N_1 0.69 38.0 4.42e-01 78.3% 74.8%
4205448 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.69 47.0 3.69e-01 80.1% 34.0%
4087895 2495.1.1.0 ↗ a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain 0.67 32.0 4.17e-01 70.5% 81.1%
3651576 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.66 39.0 4.67e-01 71.1% 88.0%
3202772 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.66 51.0 3.84e-01 80.1% 37.9%
4505113 7516.1.1.10 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CofC 0.66 34.0 3.20e-01 70.5% 41.0%
3741516 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.63 46.0 3.83e-01 80.7% 43.9%
4988582 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.63 38.0 3.88e-01 71.1% 61.9%
3284408 2006.1.5.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl 0.61 57.0 4.20e-01 100.0% 74.3%
5020379 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.60 46.0 3.62e-01 80.1% 41.7%
3869200 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.60 46.0 3.98e-01 80.1% 78.0%
4881574 2002.1.1.322 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PRMT5, PRMT5_TIM 0.60 42.0 3.44e-01 81.9% 39.9%
4963851 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 35.0 3.77e-01 71.1% 66.2%
334278 2006.1.5.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Hist_deacetyl 0.59 54.0 4.15e-01 100.0% 84.8%
4189814 7579.1.1.47 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › BD-FAE 0.58 44.0 3.85e-01 79.5% 75.6%
5023562 2002.1.1.74 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Meth_synt_2 0.57 44.0 3.64e-01 80.7% 47.0%
3642832 2004.1.1.462 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 0.57 41.0 3.83e-01 79.5% 59.5%
3649129 2004.1.1.462 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 0.57 47.0 4.52e-01 88.6% 86.7%
3711000 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 4.43e-01 88.0% 89.2%
2504767 2500.1.1.2 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ribonuc_red_lgC 0.56 50.0 3.55e-01 97.6% 80.5%
3671521 2005.1.1.43 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd 0.56 37.0 3.62e-01 72.3% 60.0%
5080417 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.56 43.0 3.27e-01 80.7% 63.0%
4947120 2007.2.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.55 37.0 3.85e-01 82.5% 72.3%
3208748 7514.1.1.0 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain 0.55 37.0 3.77e-01 80.7% 68.8%
4975603 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.54 41.0 3.80e-01 79.5% 87.4%
3684539 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.54 41.0 3.69e-01 78.3% 57.8%
5058697 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 37.0 2.95e-01 78.3% 34.0%
1149912 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.54 37.0 4.22e-01 71.1% 93.5%
3878533 2002.1.1.274 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1, Amidohydro_3 0.54 41.0 3.18e-01 79.5% 42.7%
3821203 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.54 34.0 3.56e-01 72.3% 67.1%
2390921 7579.1.1.9 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase 0.54 40.0 3.32e-01 77.1% 66.7%
3722805 2002.1.1.67 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh 0.53 37.0 2.75e-01 71.1% 32.3%
5005611 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.53 41.0 3.37e-01 80.7% 48.7%
3177457 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.53 43.0 4.21e-01 88.0% 77.3%
4030380 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.53 44.0 3.54e-01 88.0% 46.3%
3197694 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.53 33.0 3.16e-01 70.5% 53.2%
4996075 2006.1.5.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase 0.53 48.0 3.95e-01 100.0% 93.5%
4940101 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.53 40.0 3.67e-01 78.9% 63.6%
3296441 2004.1.1.462 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 0.53 44.0 3.06e-01 88.6% 29.9%
4947598 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.53 38.0 3.60e-01 72.9% 95.4%
139099 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.52 38.0 3.33e-01 75.9% 62.3%
4956362 2006.1.5.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Arginase/deacetylase › Arginase 0.52 48.0 4.02e-01 100.0% 85.7%
4023141 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 47.0 3.70e-01 100.0% 87.5%
3849228 2004.1.1.130 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NACHT 0.52 36.0 3.37e-01 78.3% 56.6%
4933897 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.52 39.0 3.21e-01 78.3% 48.5%
3583703 2004.1.1.107 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C 0.51 42.0 3.49e-01 86.1% 73.0%
3319184 2005.1.1.41 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C 0.51 36.0 3.56e-01 71.1% 74.3%
3173252 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.51 42.0 3.39e-01 86.7% 76.8%
3464847 7561.1.1.1 ↗ a/b three-layered sandwiches › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase-like hydrolases › Isochorismatase 0.51 46.0 4.08e-01 98.8% 96.7%
3710785 246.2.1.7 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › DNA_pol_E_B 0.50 46.0 3.62e-01 98.2% 56.6%
3594497 246.2.1.0 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases 0.50 46.0 3.57e-01 98.2% 54.0%
D2 medium residues 7-85
PDB
Domain cluster: rep: MZ234008.1__QZI78371.1__22664B1_012__00012__D9-90
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08281.19 best Sigma70_r4_2 28.3 1.60e-06 45.6% 51.8%