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MZ436628.1QXN68035.1X__00052

Bact-Vir

MZ436628.1__QXN68035.1__X__00052

Identity

Accession:: MZ436628 ↗
Kingdom:: phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_Mwe-Yong1

TaxID: 2852111

Cluster

View cluster (37 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-156

PDB

Domain cluster: rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04586.23 best	Peptidase_S78	33.5	6.50e-08	87.7%	70.9%

CATH (17)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6frlA00	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.65	33.0	2.32e-01	91.6%	15.1%
1nrkA01	3.30.70.1630	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	32.0	3.92e-01	96.8%	84.5%
3au0A01	2.60.40.1280	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.57	40.0	4.14e-01	98.1%	74.5%
2k3iA01	3.30.70.860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.56	32.0	4.11e-01	92.9%	100.0%
3girA02	3.30.70.1400	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains	0.56	32.0	4.08e-01	90.9%	100.0%
1yx2A02	3.30.70.1400	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains	0.55	32.0	4.02e-01	91.6%	100.0%
4b3fX02	2.40.30.270	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.54	33.0	3.97e-01	88.3%	93.9%
1nrkA02	3.30.70.1400	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains	0.54	32.0	3.96e-01	91.6%	100.0%
3zpeA00	2.60.90.50	Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) ›	0.53	35.0	3.69e-01	87.0%	73.2%
4paaA04	3.30.70.1400	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains	0.53	31.0	3.48e-01	90.3%	73.5%
3ttgA00	3.30.1360.120	Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1	0.53	33.0	2.58e-01	92.9%	27.6%
4mbrA01	2.60.40.1280	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	40.0	4.08e-01	96.1%	80.7%
2basA03	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.53	30.0	3.32e-01	98.7%	69.8%
2jpiA00	3.30.310.50	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain	0.52	32.0	3.91e-01	91.6%	99.0%
4ctaA02	3.30.70.2860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	26.0	3.52e-01	90.9%	96.0%
1fohA02	3.30.9.10	Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2	0.51	28.0	2.77e-01	92.9%	46.0%
4e1pA00	3.30.60.230	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain	0.50	17.0	2.49e-01	90.3%	65.5%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3945940	50.1.1.3 ↗	beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78	0.80	71.0	7.32e-01	93.5%	100.0%
4929754	1.1.8.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain	0.72	58.0	6.28e-01	89.6%	100.0%
3732152	331.1.1.5 ↗	a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N	0.56	30.0	4.01e-01	76.0%	100.0%
4939612	304.51.1.0 ↗	a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related	0.54	37.0	4.19e-01	92.2%	93.0%
184669	331.2.1.2 ↗	a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF2218	0.52	32.0	3.91e-01	91.6%	99.0%
3613199	331.18.1.0 ↗	a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc	0.50	32.0	3.73e-01	94.2%	92.4%
3870867	331.4.1.0 ↗	a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1	0.50	36.0	4.01e-01	88.3%	94.2%

D2 medium residues 162-240

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1qr0A02	3.90.470.20	Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain	0.75	44.0	4.00e-01	100.0%	44.7%
3l1nA02	1.20.1280.140	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.68	47.0	4.55e-01	72.2%	64.4%
3rfwA01	1.10.8.1040	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.58	39.0	4.40e-01	100.0%	91.8%
5h20A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.57	39.0	3.62e-01	72.2%	98.1%
1txjA00	2.170.150.10	Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	0.52	43.0	3.48e-01	91.1%	49.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4027274	273.1.1.2 ↗	a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C	0.72	47.0	3.81e-01	97.5%	36.6%
5074335	633.4.1.0 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor	0.55	42.0	3.80e-01	96.2%	59.6%