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MZ447858.1__UAW01161.1__X__00054

Bact-Vir

MZ447858.1__UAW01161.1__X__00054

Identity

Accession:
MZ447858 ↗
Kingdom:
phage

Quality

59.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Varunavirus› Vibrio_phage_BUCT194

TaxID: 2859072

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 925-1077
PDB
Domain cluster: rep: OQ079156.1__WCD55732.1__ROCKET24_37__00037__D262-424
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6mw4A01 2.60.120.1290 Mainly Beta › Sandwich › Jelly Rolls › 0.63 46.0 4.90e-01 83.7% 87.7%
4zelB01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.60 35.0 3.61e-01 99.3% 59.7%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 32.0 3.72e-01 97.4% 77.1%
3gneB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.64e-01 83.7% 76.4%
1kxgA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 37.0 3.79e-01 70.6% 95.1%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 41.0 3.93e-01 84.3% 88.6%
2jkbA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 4.02e-01 91.5% 89.1%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 35.0 3.49e-01 84.3% 67.3%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 3.65e-01 84.3% 82.3%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4009121 11.1.1.1285 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF31090 0.90 87.0 8.41e-01 100.0% 96.4%
3488117 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 45.0 4.35e-01 83.7% 92.4%
4955347 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 36.0 4.19e-01 83.7% 99.0%
3627862 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 37.0 3.74e-01 98.0% 68.8%
3398140 4.1.1.326 ↗ beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.50 25.0 3.30e-01 99.3% 92.0%
3389888 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.50 40.0 3.86e-01 83.7% 84.1%
D2 medium residues 1-98
PDB
D3 medium residues 259-308
PDB
D4 medium residues 309-381
PDB
D5 medium residues 769-868
PDB
D6 medium residues 1110-1251
PDB
D7 medium residues 1252-1323
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a0tA01 6.20.80.10 Special › Other non-globular › Glycosyl hydrolase fold › 0.75 53.0 5.66e-01 79.2% 86.9%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 46.0 3.64e-01 70.8% 38.5%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 48.0 3.61e-01 84.7% 49.0%
3zxfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 43.0 3.53e-01 70.8% 40.7%
5nldB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 42.0 3.41e-01 70.8% 38.4%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 42.0 3.46e-01 70.8% 40.9%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 46.0 3.85e-01 80.6% 47.9%
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 41.0 3.40e-01 70.8% 40.0%
8b55A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 3.41e-01 80.6% 62.0%
1oh1A00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.60 44.0 3.87e-01 77.8% 83.5%
2gq1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.60 43.0 3.34e-01 77.8% 75.3%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 45.0 3.45e-01 80.6% 57.9%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.29e-01 81.9% 43.6%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 42.0 3.23e-01 77.8% 66.7%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 40.0 3.06e-01 72.2% 33.1%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.58 42.0 3.56e-01 79.2% 68.8%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 43.0 3.28e-01 80.6% 60.8%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.57 44.0 3.27e-01 81.9% 63.0%
4jerA00 3.30.1500.10 Alpha Beta › 2-Layer Sandwich › Heme-binding Protein A; Chain: A; › Haem-binding HasA 0.57 42.0 3.23e-01 80.6% 81.8%
3c1aA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 40.0 3.22e-01 76.4% 89.0%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 40.0 3.30e-01 79.2% 79.1%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 36.0 3.56e-01 76.4% 63.2%
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.55e-01 77.8% 96.7%
3lv0A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.54 41.0 3.38e-01 83.3% 55.4%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.93e-01 94.4% 50.0%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.52 36.0 3.21e-01 73.6% 54.6%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 39.0 2.61e-01 79.2% 26.0%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 37.0 3.04e-01 79.2% 53.5%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.51 35.0 3.83e-01 72.2% 98.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4651619 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.70 54.0 3.94e-01 81.9% 45.8%
3233815 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 41.0 2.76e-01 76.4% 17.3%
4960303 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.67 43.0 3.93e-01 73.6% 49.5%
4290004 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.66 43.0 3.33e-01 70.8% 29.1%
3843078 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.65 44.0 3.55e-01 70.8% 38.6%
4464751 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.65 45.0 3.40e-01 72.2% 80.0%
3618896 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 47.0 4.99e-01 76.4% 92.2%
4566387 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.63 46.0 4.68e-01 80.6% 78.6%
3703666 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.63 47.0 3.55e-01 79.2% 68.8%
4606998 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.62 50.0 3.66e-01 86.1% 32.6%
4945543 4018.1.1.5 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase_C 0.62 45.0 3.53e-01 77.8% 54.4%
3911387 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 47.0 3.47e-01 80.6% 58.4%
3472304 10.1.1.1 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.62 46.0 3.35e-01 80.6% 58.5%
185760 292.2.1.2 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Plk4_PB1 0.61 46.0 3.87e-01 80.6% 48.7%
4662143 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.61 47.0 3.33e-01 83.3% 52.3%
4175925 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.59 43.0 3.19e-01 77.8% 55.3%
4122483 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.58 44.0 3.48e-01 81.9% 56.8%
4937032 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.58 43.0 3.37e-01 79.2% 60.0%
4027339 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.58 42.0 3.50e-01 79.2% 47.1%
4541046 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.58 42.0 3.24e-01 79.2% 65.7%
3601702 4018.1.1.0 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases 0.57 41.0 3.08e-01 77.8% 64.5%
1841610 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.57 42.0 3.22e-01 79.2% 66.5%
3884500 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.57 43.0 3.19e-01 84.7% 39.1%
3389476 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.57 41.0 3.23e-01 77.8% 88.7%
4335815 292.2.1.14 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › SWIM 0.57 39.0 3.86e-01 73.6% 68.0%
3719876 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.56 40.0 3.15e-01 76.4% 68.2%
4283021 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.56 43.0 3.36e-01 84.7% 60.0%
3645639 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.56 40.0 3.04e-01 79.2% 66.7%
4324894 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.55 41.0 3.07e-01 80.6% 52.3%
3217981 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.53 35.0 2.72e-01 77.8% 28.8%
4080579 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.53 40.0 3.10e-01 84.7% 72.8%
5004274 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 33.0 3.29e-01 72.2% 58.7%
3893973 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 37.0 2.85e-01 76.4% 60.0%
4260239 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.52 39.0 3.04e-01 84.7% 69.2%
4326506 4018.1.1.1 ↗ a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.52 40.0 3.07e-01 86.1% 68.1%
D8 medium residues 1324-1414
PDB
Domain cluster: rep: IMGVR_UViG_3300010235_000004-3300010235-Ga0136247_100002931__D99-185
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 47.0 3.40e-12 49.5% 75.9%