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MZ447863.1QXN68064.1X__00028

Bact-Vir

MZ447863.1__QXN68064.1__X__00028

Identity

Accession:: MZ447863 ↗
Kingdom:: phage

Quality

81.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microcystis_phage_Mea-Yong924-1

TaxID: 2859073

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 55-134_224-263_341-438

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3iylB02	1.10.2050.10	Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3	0.56	20.0	2.59e-01	89.0%	50.0%
1vwxS02	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	17.0	2.78e-01	82.1%	75.0%
1zvzA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.52	23.0	3.06e-01	73.9%	73.4%
2v1yA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.50	18.0	2.76e-01	85.8%	76.4%
6julA02	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.50	18.0	2.59e-01	80.3%	66.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5004294	4038.1.1.0 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein	0.70	63.0	5.83e-01	95.4%	98.5%
3992585	389.1.2.0 ↗	few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain	0.67	15.0	2.55e-01	76.1%	52.2%
3795553	389.1.2.0 ↗	few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain	0.67	19.0	3.02e-01	80.3%	62.4%
3948092	4038.1.1.0 ↗	alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein	0.64	55.0	5.68e-01	89.9%	100.0%
4951717	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.56	20.0	3.34e-01	83.5%	92.0%

D2 medium residues 135-223

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3kdrA02	3.40.140.120	Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 ›	0.87	58.0	5.09e-01	100.0%	48.0%
3gs9A01	6.20.110.10	Special › Other non-globular › Thrombin, subunit H ›	0.58	37.0	3.93e-01	85.4%	73.4%
2l72A00	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.58	35.0	3.27e-01	100.0%	45.8%
3e8vA00	2.60.40.1120	Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain	0.56	30.0	3.18e-01	88.8%	54.9%
1o75A03	2.60.40.1300	Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain C	0.54	39.0	3.44e-01	88.8%	52.3%
2xtlA02	2.60.40.1140	Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain	0.53	32.0	3.09e-01	88.8%	53.5%
4do8A00	2.10.60.10	Mainly Beta › Ribbon › CD59 › CD59	0.53	34.0	3.78e-01	100.0%	87.9%
8afoA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.52	30.0	3.05e-01	89.9%	56.8%
1x67A01	3.40.20.10	Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin	0.50	35.0	3.16e-01	100.0%	49.6%
8alzB04	2.60.40.150	Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain	0.50	34.0	3.22e-01	92.1%	57.3%

ECOD (15)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4034031	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.81	55.0	6.36e-01	88.8%	95.4%
1557493	4056.1.1.6 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel	0.71	54.0	5.71e-01	87.6%	88.9%
4031151	4056.1.1.0 ↗	beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein	0.70	50.0	5.37e-01	88.8%	88.0%
3621262	382.1.1.0 ↗	few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like	0.64	40.0	4.67e-01	100.0%	91.7%
5055064	11.1.4.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like	0.59	31.0	3.66e-01	88.8%	73.3%
144307	224.1.1.1 ↗	a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF	0.58	35.0	3.27e-01	100.0%	45.8%
4941023	11.1.4.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like	0.57	31.0	3.20e-01	88.8%	54.1%
5048757	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.56	31.0	2.72e-01	88.8%	36.3%
4559514	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.54	30.0	3.41e-01	87.6%	70.0%
3268419	224.1.1.1 ↗	a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF	0.53	35.0	3.31e-01	100.0%	53.9%
3491784	220.1.1.158 ↗	beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1	0.52	41.0	3.76e-01	88.8%	79.2%
3993711	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	29.0	2.80e-01	89.9%	41.9%
3433666	844.1.1.2 ↗	beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR	0.51	45.0	3.55e-01	100.0%	92.8%
3691249	2492.1.1.0 ↗	a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like	0.51	36.0	3.27e-01	100.0%	51.5%
3599709	9.5.1.0 ↗	beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B	0.51	43.0	3.49e-01	93.3%	97.1%

D3 medium residues 264-340

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fczA00	3.10.450.710	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC	0.60	50.0	3.77e-01	90.9%	64.5%
3uoxB01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.57	44.0	3.01e-01	85.7%	89.2%
4k7cA01	3.90.70.10	Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases	0.54	46.0	2.90e-01	92.2%	47.7%
8dc1A01	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.52	42.0	3.12e-01	97.4%	93.7%
1icrA00	3.40.109.10	Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase	0.52	43.0	3.13e-01	90.9%	44.0%
1dt9A01	3.30.960.10	Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1	0.51	36.0	3.30e-01	74.0%	74.3%
4ubtD00	3.40.47.10	Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase	0.51	44.0	2.82e-01	97.4%	99.2%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5045478	7527.1.1.1 ↗	a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE	0.67	46.0	3.25e-01	72.7%	70.2%
3517620	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.64	55.0	3.68e-01	97.4%	56.2%
3993839	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.60	51.0	3.39e-01	94.8%	60.3%
3519143	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.57	49.0	3.33e-01	97.4%	60.0%
4125761	219.1.1.17 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2	0.55	46.0	3.11e-01	90.9%	69.5%
4945661	2003.1.5.66 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11	0.55	43.0	3.14e-01	88.3%	83.4%
3962443	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.53	39.0	3.16e-01	80.5%	53.1%
3722378	243.3.1.0 ↗	a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin	0.53	28.0	2.72e-01	71.4%	44.3%
4595166	5076.2.1.0 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ	0.52	45.0	3.22e-01	96.1%	96.4%
3800293	304.8.1.0 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like	0.52	36.0	3.35e-01	71.4%	92.5%
5056444	2002.1.1.29 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS	0.51	40.0	2.70e-01	89.6%	80.6%
4499424	812.1.1.1 ↗	a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain › MinE	0.50	31.0	3.21e-01	71.4%	65.7%