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MZ456037.1__QYC54342.1__SEA_PICKLES13_6__00006

Bact-Vir

MZ456037.1__QYC54342.1__SEA_PICKLES13_6__00006

Identity

Accession:
MZ456037 ↗
Kingdom:
phage

Quality

72.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Appavirus› Microbacterium_phage_Pickles13

TaxID: 2862996

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-85
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.69 48.0 5.20e-01 74.1% 95.3%
2dfuA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.69 51.0 5.47e-01 94.4% 100.0%
1fblA02 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.67 51.0 3.50e-01 83.3% 94.2%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.67 57.0 3.57e-01 96.3% 93.3%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 55.0 4.15e-01 100.0% 76.7%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 51.0 3.21e-01 87.0% 38.8%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 51.0 3.19e-01 88.9% 38.9%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 4.20e-01 96.3% 85.2%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 51.0 3.21e-01 88.9% 82.1%
2edgA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 53.0 4.07e-01 94.4% 86.9%
1g3pA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.64 45.0 3.86e-01 74.1% 55.7%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.63 44.0 4.30e-01 74.1% 75.4%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.63 44.0 3.87e-01 74.1% 59.8%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.62 52.0 4.00e-01 98.1% 98.5%
4ozuA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 49.0 3.03e-01 90.7% 69.5%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.15e-01 100.0% 70.2%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 51.0 4.07e-01 98.1% 69.9%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.61 52.0 3.58e-01 100.0% 68.6%
1ki1B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 3.91e-01 100.0% 62.0%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.61 51.0 4.08e-01 98.1% 67.2%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 47.0 3.80e-01 87.0% 74.8%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.60 50.0 4.24e-01 100.0% 78.2%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.60 52.0 4.91e-01 98.1% 98.5%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 3.91e-01 100.0% 70.3%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.34e-01 96.3% 84.9%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 49.0 4.22e-01 100.0% 82.5%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.19e-01 98.1% 90.5%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 4.32e-01 87.0% 83.3%
1qhuA01 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.59 50.0 3.52e-01 98.1% 71.0%
3a7sA00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.59 49.0 3.41e-01 100.0% 78.9%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 45.0 3.93e-01 88.9% 52.8%
2xziA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 51.0 3.08e-01 100.0% 61.6%
3uc2A00 2.60.40.3340 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 0.58 45.0 3.59e-01 90.7% 92.7%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 46.0 3.85e-01 96.3% 66.7%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.57 41.0 3.69e-01 77.8% 82.3%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.57 38.0 3.29e-01 70.4% 42.1%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 47.0 4.34e-01 100.0% 79.2%
2g7hA01 3.30.160.460 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 3.70e-01 77.8% 56.6%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.94e-01 98.1% 92.9%
3io5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 2.95e-01 92.6% 22.5%
3uepA00 2.30.330.10 Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like 0.56 37.0 3.34e-01 70.4% 71.8%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 44.0 3.58e-01 90.7% 79.8%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.22e-01 77.8% 70.0%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 41.0 3.30e-01 83.3% 67.0%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 3.08e-01 87.0% 36.8%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.10e-01 100.0% 45.3%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.54 39.0 3.70e-01 75.9% 83.1%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 44.0 3.73e-01 96.3% 93.0%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 2.91e-01 75.9% 87.9%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.39e-01 87.0% 69.9%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 37.0 2.94e-01 83.3% 66.4%
3fhlA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 34.0 2.49e-01 74.1% 78.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839082 4312.1.1.20 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF3519, PBECR1 0.70 51.0 3.81e-01 77.8% 35.6%
3252223 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 53.0 3.24e-01 87.0% 22.5%
3782253 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.68 53.0 3.30e-01 87.0% 36.1%
3994676 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.68 51.0 3.48e-01 83.3% 91.2%
3584551 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.68 58.0 3.87e-01 98.1% 72.6%
3260099 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.05e-01 77.8% 45.6%
5027650 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.66 45.0 4.24e-01 70.4% 63.1%
3257657 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.66 53.0 3.17e-01 88.9% 16.7%
3409554 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.66 58.0 4.83e-01 100.0% 100.0%
4030337 5.1.4.81 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BING4CT 0.65 51.0 3.05e-01 88.9% 25.9%
426018 5.1.4.27 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 51.0 3.18e-01 88.9% 38.2%
5013202 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 44.0 3.45e-01 75.9% 32.2%
3470912 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 52.0 4.10e-01 94.4% 83.3%
3248729 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 54.0 4.06e-01 98.1% 65.7%
161650 11.9.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH 0.63 53.0 3.42e-01 96.3% 64.1%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.63 46.0 4.37e-01 79.6% 80.0%
3750304 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 4.03e-01 94.4% 79.2%
3716034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 54.0 3.33e-01 98.1% 73.3%
3899590 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 52.0 3.88e-01 100.0% 62.6%
3646080 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 51.0 3.79e-01 94.4% 62.7%
3248163 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 52.0 3.98e-01 100.0% 58.6%
3859895 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.62 52.0 3.18e-01 100.0% 25.1%
4334562 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.61 45.0 3.50e-01 81.5% 40.0%
4399266 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.61 44.0 3.49e-01 75.9% 35.7%
5042309 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.60 41.0 3.53e-01 74.1% 43.3%
3507415 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 50.0 3.53e-01 100.0% 54.7%
4296952 5.1.4.250 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF2415 0.60 50.0 3.14e-01 100.0% 87.4%
4424238 220.1.1.127 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_GEF_YEL1 0.59 42.0 3.18e-01 79.6% 34.2%
4436563 5.1.4.171 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HELP+Beta-prop_EML 0.59 51.0 3.17e-01 100.0% 89.4%
3242544 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.64e-01 90.7% 73.8%
3629602 5.1.5.148 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, HELP, Beta-prop_EML 0.59 48.0 2.98e-01 94.4% 74.4%
3250597 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 48.0 4.00e-01 100.0% 71.8%
3806796 5.1.4.91 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VID27 0.59 47.0 2.79e-01 92.6% 25.9%
3490944 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.59 47.0 3.59e-01 94.4% 74.5%
3914165 5.1.4.269 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.58 49.0 3.02e-01 100.0% 80.3%
4317534 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 49.0 3.24e-01 100.0% 82.0%
3524786 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 48.0 3.41e-01 100.0% 72.3%
3230836 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.57 48.0 3.37e-01 100.0% 72.0%
1921564 101.1.2.237 ↗ alpha arrays › HTH › HTH › winged helix domain › ThcOx 0.57 40.0 3.21e-01 77.8% 35.7%
3593313 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 45.0 3.28e-01 100.0% 74.7%
1921563 101.1.2.175 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_57 0.56 41.0 3.35e-01 79.6% 40.2%
2905297 10.1.1.41 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.56 45.0 3.14e-01 94.4% 60.4%
3600254 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 45.0 3.27e-01 100.0% 79.5%
3593073 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 46.0 3.25e-01 100.0% 70.8%
3230548 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.55 45.0 3.16e-01 100.0% 69.3%
5043213 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 45.0 3.15e-01 100.0% 79.0%
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 45.0 3.10e-01 100.0% 75.7%
3448896 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 38.0 3.26e-01 77.8% 60.0%
5081724 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 43.0 3.06e-01 100.0% 78.0%
4445602 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 38.0 3.33e-01 85.2% 75.6%