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MZ456037.1__QYC54349.1__SEA_PICKLES13_13__00013

Bact-Vir

MZ456037.1__QYC54349.1__SEA_PICKLES13_13__00013

Identity

Accession:
MZ456037 ↗
Kingdom:
phage

Quality

58.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Appavirus› Microbacterium_phage_Pickles13

TaxID: 2862996

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-70
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvuA00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.74 58.0 5.27e-01 85.7% 68.0%
1zbuB01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.70 50.0 4.59e-01 76.8% 77.0%
2j5bA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.70 53.0 4.24e-01 85.7% 75.2%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.68 52.0 4.67e-01 82.1% 96.2%
1uhsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 47.0 4.79e-01 87.5% 77.8%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 50.0 4.90e-01 89.3% 76.7%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.65 48.0 4.13e-01 78.6% 87.5%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 45.0 4.30e-01 87.5% 61.8%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 46.0 4.73e-01 89.3% 79.6%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 46.0 4.38e-01 87.5% 67.2%
1lfuP00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 45.0 4.01e-01 85.7% 57.3%
2dk4A00 4.10.280.110 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Pre-mRNA processing factor 4 domain 0.58 41.0 3.81e-01 76.8% 76.3%
3cs1A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 47.0 3.84e-01 96.4% 56.0%
3mesA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.56 48.0 3.07e-01 100.0% 77.7%
3fotA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.55 49.0 3.15e-01 98.2% 45.8%
3rimB01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.54 41.0 2.64e-01 91.1% 82.2%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3430246 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.79 55.0 5.76e-01 73.2% 84.0%
3802106 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.77 51.0 5.33e-01 71.4% 76.0%
3930571 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.77 57.0 5.32e-01 80.4% 64.3%
4565026 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.76 54.0 4.95e-01 76.8% 58.7%
3496288 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.76 58.0 5.60e-01 85.7% 84.6%
3180105 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.76 51.0 5.72e-01 71.4% 100.0%
4517630 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.75 53.0 5.60e-01 75.0% 100.0%
3372994 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.75 56.0 5.65e-01 82.1% 96.4%
3722621 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.74 56.0 5.27e-01 83.9% 70.0%
3273602 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.73 58.0 5.93e-01 89.3% 100.0%
3191289 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.73 52.0 5.49e-01 76.8% 100.0%
1066185 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.72 51.0 5.18e-01 75.0% 77.8%
3253225 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.72 57.0 5.05e-01 89.3% 85.9%
4033136 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.72 49.0 4.98e-01 71.4% 72.7%
3249324 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.71 54.0 4.97e-01 83.9% 65.3%
4087978 4993.1.1.0 ↗ extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.70 49.0 3.97e-01 83.9% 41.0%
1168191 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.70 50.0 4.57e-01 76.8% 76.0%
3579277 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.70 49.0 5.00e-01 75.0% 76.4%
4201679 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 50.0 4.32e-01 87.5% 51.8%
3489475 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.68 53.0 5.24e-01 87.5% 96.7%
4028828 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.67 53.0 5.07e-01 85.7% 96.9%
3583564 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.67 54.0 5.04e-01 91.1% 78.6%
3994610 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.66 54.0 5.21e-01 92.9% 90.8%
3241469 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.66 52.0 5.25e-01 89.3% 100.0%
4263826 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.65 50.0 4.78e-01 87.5% 71.4%
3737764 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.65 54.0 5.02e-01 96.4% 73.3%
3485814 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.65 52.0 4.33e-01 91.1% 88.6%
3472534 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.65 52.0 4.40e-01 91.1% 93.0%
3377213 130.1.1.39 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF7086 0.65 51.0 4.73e-01 83.9% 75.7%
3889817 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.64 45.0 4.02e-01 87.5% 51.2%
3676853 109.4.1.1865 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAP 0.63 50.0 2.93e-01 91.1% 19.2%
3834032 109.4.1.1865 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAP 0.62 51.0 3.15e-01 94.6% 43.9%
3923920 148.1.1.8 ↗ alpha arrays › Histone-like › Histone-related › Histone › TFIID_30kDa 0.62 46.0 3.75e-01 80.4% 50.5%
3369291 109.4.1.1865 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAP 0.62 51.0 2.85e-01 96.4% 16.5%
3886164 101.1.1.1 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.53 38.0 3.96e-01 73.2% 84.0%