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MZ456352.1__QXN60102.1__KUA24_35__00035

Bact-Vir

MZ456352.1__QXN60102.1__KUA24_35__00035

Identity

Accession:
MZ456352 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_HNL01

TaxID: 2853169

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-65
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z84A00 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.67 52.0 3.66e-01 87.1% 87.6%
1kopA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.61 49.0 3.43e-01 91.9% 69.5%
3q31A00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.61 50.0 3.42e-01 93.5% 62.3%
4twlA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.61 49.0 3.34e-01 91.9% 67.4%
4xfwA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.60 48.0 3.34e-01 91.9% 67.3%
3iayA01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 50.0 4.37e-01 100.0% 82.7%
2vldA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 46.0 3.90e-01 91.9% 62.4%
4dapA02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.55 44.0 3.42e-01 91.9% 50.7%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.51e-01 100.0% 64.1%
4lpqA02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.52 43.0 3.55e-01 100.0% 72.9%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.62e-01 100.0% 75.0%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 44.0 3.81e-01 100.0% 76.4%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 40.0 3.33e-01 93.5% 46.5%
4dkjA02 3.90.120.10 Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 0.52 41.0 3.70e-01 91.9% 62.0%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.59e-01 100.0% 62.9%
3h6rA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 36.0 2.86e-01 77.4% 60.5%
2fl4A02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 3.09e-01 75.8% 97.1%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 44.0 3.86e-01 100.0% 93.8%
3k0yA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.50 41.0 4.11e-01 100.0% 90.8%
3nqiA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.50 40.0 4.01e-01 100.0% 87.7%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 43.0 3.78e-01 100.0% 76.5%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3290706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.69e-01 79.0% 95.2%
3608016 327.6.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like 0.62 47.0 3.98e-01 82.3% 99.0%
3399727 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.61 45.0 2.78e-01 79.0% 26.3%
3891882 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.59 41.0 2.75e-01 75.8% 80.0%
3700775 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.58 45.0 3.99e-01 87.1% 71.6%
4998521 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.58 43.0 3.64e-01 82.3% 66.4%
4218734 2.1.1.177 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.57 51.0 4.42e-01 100.0% 75.8%
4931034 2008.1.1.5 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.57 46.0 3.82e-01 91.9% 59.1%
3592676 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 48.0 3.94e-01 100.0% 77.6%
4976802 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 44.0 3.54e-01 90.3% 52.6%
3555330 2008.1.1.97 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.56 40.0 2.69e-01 79.0% 59.3%
3283255 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 42.0 3.75e-01 85.5% 74.7%
3327405 219.1.1.1 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.55 39.0 3.08e-01 77.4% 45.7%
4990485 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 44.0 3.23e-01 88.7% 83.4%
3976034 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.55 47.0 3.92e-01 100.0% 80.0%
4938605 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.55 43.0 3.05e-01 91.9% 35.7%
4950791 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.54 43.0 3.23e-01 90.3% 45.1%
4053762 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 42.0 3.40e-01 85.5% 50.8%
5073863 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.54 36.0 3.63e-01 71.0% 76.9%
3839909 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.54 43.0 2.91e-01 90.3% 39.1%
4001702 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 44.0 3.77e-01 100.0% 80.9%
4163068 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 41.0 2.28e-01 90.3% 8.5%
4052370 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 4.29e-01 100.0% 89.2%
4233541 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.52 45.0 3.94e-01 100.0% 80.0%
3253903 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.52 42.0 2.98e-01 91.9% 35.0%
5053767 2008.1.1.155 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › CoiA_nuc 0.52 42.0 3.08e-01 91.9% 91.9%
3950933 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.52 40.0 2.70e-01 85.5% 37.4%
3784540 2.1.1.116 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Spt6_S1 0.52 45.0 3.81e-01 100.0% 69.1%
3784945 246.3.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos 0.52 40.0 2.76e-01 88.7% 87.9%
4995707 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 46.0 3.93e-01 100.0% 78.0%
1558018 4091.1.1.1 ↗ beta complex topology › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like › YkuD 0.52 42.0 3.51e-01 100.0% 65.4%
3938425 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 43.0 3.87e-01 100.0% 69.5%
4928402 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 39.0 3.34e-01 85.5% 69.6%
3704723 2.1.1.25 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.51 42.0 3.51e-01 100.0% 76.8%
3838750 2008.1.1.59 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.51 41.0 3.25e-01 93.5% 53.1%
4379699 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 43.0 4.28e-01 100.0% 95.4%