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MZ456352.1__QXN60126.1__KUA24_59__00059

Bact-Vir

MZ456352.1__QXN60126.1__KUA24_59__00059

Identity

Accession:
MZ456352 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_HNL01

TaxID: 2853169

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.69 55.0 4.37e-01 88.6% 98.6%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.65 36.0 4.41e-01 88.6% 95.0%
2qpzA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 48.0 4.23e-01 81.4% 96.1%
1wxcB01 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.58 36.0 3.80e-01 75.7% 71.0%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.57 43.0 4.08e-01 84.3% 69.7%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 3.78e-01 85.7% 70.3%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.57 44.0 3.67e-01 87.1% 95.5%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.67e-01 87.1% 73.6%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.86e-01 74.3% 89.2%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 3.51e-01 92.9% 55.4%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.54 46.0 3.83e-01 98.6% 92.4%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.54 42.0 3.45e-01 87.1% 75.7%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.70e-01 87.1% 74.8%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.53 44.0 3.51e-01 95.7% 89.7%
2la7A01 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.52 43.0 3.66e-01 98.6% 89.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 3.51e-01 87.1% 90.9%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 34.0 3.63e-01 92.9% 77.4%
1xxmC01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.51 38.0 3.80e-01 90.0% 78.4%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.51 34.0 2.77e-01 70.0% 61.6%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.67e-01 92.9% 75.0%
3fjyA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 42.0 3.23e-01 94.3% 97.1%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.26e-01 85.7% 65.2%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 44.0 2.88e-01 98.6% 28.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3896484 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.62 48.0 4.10e-01 87.1% 67.5%
3540139 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.61 42.0 3.61e-01 72.9% 61.7%
3778135 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 49.0 3.91e-01 91.4% 54.0%
3523477 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.61 49.0 3.71e-01 92.9% 43.8%
3709251 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 41.0 2.72e-01 72.9% 58.2%
3999510 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 48.0 3.92e-01 91.4% 75.7%
5047929 2484.1.1.75 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e 0.60 42.0 2.96e-01 74.3% 71.5%
4943193 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 42.0 3.07e-01 74.3% 87.4%
3923688 5.1.4.116 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › IKI3 0.59 47.0 2.96e-01 90.0% 88.1%
3215886 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 3.63e-01 85.7% 80.7%
3283450 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.57 39.0 2.70e-01 71.4% 39.2%
3243986 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.57 45.0 3.93e-01 85.7% 85.7%
5021724 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 4.24e-01 87.1% 78.8%
3475856 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.56 46.0 3.43e-01 92.9% 52.1%
3743439 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.56 40.0 3.00e-01 75.7% 45.4%
4344898 220.1.1.222 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Swc3, PF26242 0.56 43.0 3.38e-01 87.1% 47.0%
5007103 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 4.20e-01 87.1% 78.8%
3781450 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.56 44.0 3.77e-01 92.9% 74.6%
4026437 5.1.3.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.55 42.0 2.83e-01 85.7% 95.7%
3287961 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.55 39.0 2.65e-01 74.3% 41.8%
5012403 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 3.47e-01 92.9% 64.2%
4972327 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.54 37.0 3.39e-01 72.9% 77.9%
3178413 220.1.1.69 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Meiotic_rec114 0.54 42.0 3.59e-01 92.9% 86.7%
4941649 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 41.0 3.83e-01 87.1% 75.8%
3271309 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 42.0 3.59e-01 91.4% 65.6%
4030668 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.53 39.0 4.02e-01 80.0% 86.2%
4159891 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.53 47.0 2.97e-01 98.6% 22.8%
3199439 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.13e-01 90.0% 43.2%
3960510 3844.2.1.0 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone 0.52 36.0 2.49e-01 72.9% 63.9%
3183932 5.1.2.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_32N 0.51 44.0 2.87e-01 94.3% 89.5%
4463632 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.50 38.0 3.56e-01 82.9% 86.7%