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MZ475898.1__QYW05492.1__pEaSNUABM25_00136__00136
Bact-VirMZ475898.1__QYW05492.1__pEaSNUABM25_00136__00136
Identity
- Accession:
- MZ475898 ↗
- Kingdom:
- phage
Quality
48.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 550-637
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21277.3 best | T6SS_VgrG3-like_C | 86.2 | 3.50e-24 | 100.0% | 43.7% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4irlB02 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 41.0 | 4.06e-01 | 76.1% | 76.3% |
| 3pwxA01 | 1.20.1330.10 | Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain | 0.51 | 41.0 | 3.34e-01 | 90.9% | 64.7% |
| 3iu6A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 37.0 | 3.20e-01 | 77.3% | 69.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3909247 | 192.8.1.378 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BRINP | 0.59 | 41.0 | 3.62e-01 | 72.7% | 51.1% |
| 4242921 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.52 | 42.0 | 3.74e-01 | 87.5% | 70.8% |
D2
medium
residues 638-727
Domain cluster:
rep: OM112209.1__UKL29971.1__X__00001__D70-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21277.3 best | T6SS_VgrG3-like_C | 93.1 | 2.50e-26 | 87.8% | 42.6% |
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.76 | 53.0 | 5.36e-01 | 72.2% | 76.9% |
| 7zmgL01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 51.0 | 5.41e-01 | 72.2% | 88.7% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.71 | 40.0 | 3.90e-01 | 94.4% | 50.5% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.71 | 54.0 | 4.59e-01 | 81.1% | 93.2% |
| 1nafA02 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 39.0 | 4.07e-01 | 93.3% | 58.8% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 54.0 | 5.78e-01 | 93.3% | 100.0% |
| 3k3uA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.67 | 53.0 | 4.62e-01 | 84.4% | 94.9% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 51.0 | 4.45e-01 | 84.4% | 92.9% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 51.0 | 4.45e-01 | 84.4% | 91.5% |
| 1x9fA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.66 | 50.0 | 4.26e-01 | 81.1% | 88.4% |
| 1tu9A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 49.0 | 4.39e-01 | 84.4% | 94.7% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.63 | 47.0 | 4.03e-01 | 80.0% | 90.3% |
| 2vqgA00 | 1.10.10.1280 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Alpha-helical porin B/porin C | 0.62 | 43.0 | 4.66e-01 | 91.1% | 85.5% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 53.0 | 4.36e-01 | 100.0% | 71.4% |
| 1t3dA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.61 | 48.0 | 4.26e-01 | 88.9% | 92.1% |
| 2fzfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 53.0 | 4.55e-01 | 100.0% | 83.3% |
| 1dpsA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 51.0 | 4.33e-01 | 96.7% | 73.6% |
| 3lk5A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 53.0 | 3.61e-01 | 100.0% | 51.7% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.59 | 44.0 | 3.40e-01 | 78.9% | 83.3% |
| 2mx8A01 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.59 | 49.0 | 4.62e-01 | 94.4% | 85.0% |
| 5b00A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 51.0 | 3.73e-01 | 100.0% | 67.8% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 50.0 | 4.53e-01 | 94.4% | 95.8% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.58 | 48.0 | 4.19e-01 | 94.4% | 77.6% |
| 3q1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.58 | 46.0 | 4.07e-01 | 88.9% | 98.6% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 48.0 | 4.52e-01 | 90.0% | 92.6% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.57 | 46.0 | 4.46e-01 | 92.2% | 77.7% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 45.0 | 4.68e-01 | 85.6% | 100.0% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.56 | 51.0 | 4.72e-01 | 98.9% | 78.9% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 40.0 | 3.79e-01 | 98.9% | 62.6% |
| 2kj8A00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.56 | 49.0 | 4.51e-01 | 100.0% | 75.4% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.56 | 43.0 | 4.09e-01 | 82.2% | 68.5% |
| 1r2jA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 45.0 | 3.90e-01 | 90.0% | 79.2% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.55 | 42.0 | 3.66e-01 | 81.1% | 73.7% |
| 8cdaC01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.55 | 36.0 | 3.36e-01 | 82.2% | 52.1% |
| 4ehsA00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.55 | 47.0 | 4.24e-01 | 95.6% | 86.3% |
| 3he0B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 40.0 | 3.23e-01 | 76.7% | 70.8% |
| 2psmA00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.53 | 44.0 | 4.12e-01 | 94.4% | 100.0% |
| 3b5oA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.53 | 45.0 | 3.43e-01 | 97.8% | 76.1% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.52 | 46.0 | 3.80e-01 | 94.4% | 71.9% |
| 4wqoD00 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.52 | 45.0 | 3.94e-01 | 100.0% | 72.3% |
| 6dewA01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 40.0 | 3.13e-01 | 82.2% | 44.7% |
| 1txdA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.51 | 44.0 | 3.39e-01 | 100.0% | 78.4% |
| 3rc3A05 | 1.20.58.1080 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 38.0 | 3.56e-01 | 81.1% | 62.8% |
| 3uj9A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.51 | 38.0 | 2.87e-01 | 82.2% | 91.9% |
| 1aorA03 | 1.10.599.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 | 0.51 | 43.0 | 3.41e-01 | 98.9% | 78.3% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.50 | 38.0 | 3.60e-01 | 80.0% | 66.1% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1284710 | 235.1.1.25 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › T6SS_VgrG3-like_C | 0.95 | 91.0 | 6.70e-01 | 100.0% | 44.5% |
| 3799978 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.69 | 43.0 | 3.69e-01 | 96.7% | 40.0% |
| 4982026 | 150.1.1.209 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF7121 | 0.69 | 60.0 | 5.15e-01 | 94.4% | 78.6% |
| 5058990 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.66 | 45.0 | 3.98e-01 | 96.7% | 50.4% |
| 4939273 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.66 | 37.0 | 4.11e-01 | 93.3% | 70.0% |
| 3955636 | 604.12.1.106 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF28475 | 0.63 | 37.0 | 3.99e-01 | 97.8% | 69.3% |
| 3589790 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.62 | 54.0 | 4.07e-01 | 100.0% | 79.6% |
| 4956683 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.61 | 47.0 | 4.58e-01 | 98.9% | 73.0% |
| 4014082 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.61 | 43.0 | 4.05e-01 | 73.3% | 94.5% |
| 3976441 | 633.10.1.0 ↗ | alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like | 0.61 | 49.0 | 4.43e-01 | 88.9% | 91.2% |
| 4937883 | 150.1.1.5 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 | 0.60 | 53.0 | 4.58e-01 | 100.0% | 82.1% |
| 5026526 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.60 | 51.0 | 4.96e-01 | 93.3% | 99.0% |
| 3925011 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.60 | 50.0 | 3.64e-01 | 93.3% | 78.9% |
| 4975860 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.59 | 40.0 | 4.14e-01 | 100.0% | 74.1% |
| 3974289 | 2004.1.1.305 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IcmF-related_N | 0.59 | 51.0 | 3.46e-01 | 100.0% | 37.8% |
| 4485423 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.59 | 47.0 | 4.30e-01 | 90.0% | 65.8% |
| 3731168 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.59 | 49.0 | 4.71e-01 | 94.4% | 95.2% |
| 3989031 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.58 | 48.0 | 3.59e-01 | 93.3% | 79.6% |
| 3944203 | 4275.1.1.7 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_GPL | 0.58 | 51.0 | 4.57e-01 | 100.0% | 98.5% |
| 3247352 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 49.0 | 4.45e-01 | 94.4% | 84.0% |
| 3828970 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.58 | 44.0 | 4.41e-01 | 88.9% | 76.8% |
| 3921635 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.58 | 53.0 | 4.12e-01 | 100.0% | 67.9% |
| 3696407 | 4121.1.1.7 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 | 0.58 | 52.0 | 3.80e-01 | 97.8% | 67.7% |
| 3419702 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.57 | 48.0 | 4.08e-01 | 95.6% | 74.2% |
| 3843851 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.57 | 52.0 | 4.19e-01 | 100.0% | 81.8% |
| 3687207 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.57 | 47.0 | 4.38e-01 | 94.4% | 83.3% |
| 5072045 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.56 | 43.0 | 4.11e-01 | 88.9% | 70.5% |
| 184733 | 3640.1.1.1 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp | 0.56 | 43.0 | 3.72e-01 | 82.2% | 52.9% |
| 3341807 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.55 | 42.0 | 3.96e-01 | 87.8% | 67.3% |
| 3743879 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.54 | 39.0 | 3.89e-01 | 93.3% | 71.6% |
| 5034628 | 632.12.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 | 0.54 | 46.0 | 4.53e-01 | 93.3% | 88.8% |
| 3631469 | 601.14.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin | 0.54 | 47.0 | 3.78e-01 | 97.8% | 72.8% |
| 3593417 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.54 | 44.0 | 3.72e-01 | 92.2% | 83.7% |
| 3908483 | 633.23.1.22 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL | 0.54 | 45.0 | 3.92e-01 | 94.4% | 83.4% |
| 4030543 | 310.2.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF | 0.53 | 49.0 | 3.86e-01 | 98.9% | 90.3% |
| 5067915 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.52 | 46.0 | 3.36e-01 | 100.0% | 66.4% |
| 3503769 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.51 | 43.0 | 3.86e-01 | 94.4% | 93.1% |
| 3687147 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 45.0 | 3.61e-01 | 97.8% | 91.1% |
| 4456363 | 2003.1.5.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS | 0.50 | 44.0 | 3.09e-01 | 100.0% | 73.7% |
| 4019479 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.50 | 45.0 | 3.10e-01 | 100.0% | 55.3% |