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MZ477002.1__QXM18519.1__Phab24_id073__00073
Bact-VirMZ477002.1__QXM18519.1__Phab24_id073__00073
Identity
- Accession:
- MZ477002 ↗
- Kingdom:
- phage
Quality
95.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-56
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5h1kB02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.73 | 46.0 | 2.80e-01 | 74.5% | 10.6% |
| 7vbnL01 | 3.30.160.190 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain | 0.71 | 60.0 | 4.99e-01 | 94.5% | 75.8% |
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.71 | 55.0 | 5.77e-01 | 89.1% | 97.9% |
| 1b69A00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.70 | 55.0 | 5.05e-01 | 83.6% | 79.7% |
| 3hk0B02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.69 | 57.0 | 4.28e-01 | 92.7% | 42.3% |
| 3qwmA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.67 | 55.0 | 4.25e-01 | 92.7% | 41.7% |
| 5ja1B00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.66 | 44.0 | 4.15e-01 | 89.1% | 57.6% |
| 8adbA01 | 3.90.70.120 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.65 | 53.0 | 3.60e-01 | 100.0% | 24.2% |
| 5ljvA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.64 | 51.0 | 3.63e-01 | 89.1% | 90.0% |
| 5umsA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.63 | 50.0 | 4.19e-01 | 92.7% | 49.0% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 53.0 | 3.36e-01 | 98.2% | 24.0% |
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 46.0 | 3.75e-01 | 92.7% | 41.7% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.60 | 52.0 | 3.90e-01 | 100.0% | 60.4% |
| 1auvA01 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.60 | 46.0 | 4.50e-01 | 100.0% | 76.7% |
| 3akhA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.60 | 49.0 | 3.83e-01 | 98.2% | 97.8% |
| 1qqgA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.59 | 51.0 | 4.23e-01 | 100.0% | 79.6% |
| 1jt8A00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 44.0 | 3.72e-01 | 85.5% | 76.5% |
| 3dcxA00 | 2.30.29.50 | Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain | 0.58 | 48.0 | 3.80e-01 | 92.7% | 43.6% |
| 3n54B01 | 6.20.190.10 | Special › Other non-globular › Nuclear Transport Factor 2; Chain: A, › Nutrient germinant receptor protein C, domain 1 | 0.58 | 42.0 | 4.13e-01 | 78.2% | 86.9% |
| 2akjA03 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.58 | 50.0 | 3.90e-01 | 100.0% | 57.6% |
| 2vtfA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 4.02e-01 | 92.7% | 91.2% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.57 | 44.0 | 3.37e-01 | 87.3% | 35.5% |
| 3hxlA02 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 47.0 | 4.09e-01 | 96.4% | 86.7% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 44.0 | 4.27e-01 | 98.2% | 77.3% |
| 3vhxF00 | 2.60.40.4330 | Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain | 0.56 | 40.0 | 3.27e-01 | 76.4% | 79.4% |
| 2dm4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 3.87e-01 | 92.7% | 90.4% |
| 2hqsA01 | 3.40.50.10070 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain | 0.55 | 47.0 | 3.56e-01 | 100.0% | 84.5% |
| 2w9jA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.55 | 43.0 | 4.11e-01 | 94.5% | 74.6% |
| 2rkuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 44.0 | 3.84e-01 | 92.7% | 88.8% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 44.0 | 3.93e-01 | 92.7% | 62.7% |
| 2l2mA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 43.0 | 4.05e-01 | 94.5% | 90.0% |
| 3syjA02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.53 | 37.0 | 2.19e-01 | 98.2% | 7.0% |
| 1n26A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 3.60e-01 | 94.5% | 86.5% |
| 2ob9A00 | 3.30.2220.20 | Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like | 0.53 | 43.0 | 3.48e-01 | 90.9% | 61.7% |
| 3kf8B00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 43.0 | 3.38e-01 | 92.7% | 91.7% |
| 4mamA02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.52 | 41.0 | 3.70e-01 | 100.0% | 61.7% |
| 4jr7A02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 3.11e-01 | 83.6% | 87.5% |
| 2r4hC01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 41.0 | 3.66e-01 | 94.5% | 77.3% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.52 | 41.0 | 3.81e-01 | 94.5% | 75.0% |
| 3wa1A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 40.0 | 3.00e-01 | 92.7% | 65.0% |
| 2ckkA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.52e-01 | 81.8% | 71.9% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.51 | 40.0 | 2.85e-01 | 89.1% | 80.7% |
| 2z4dA00 | 2.30.29.70 | Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 | 0.50 | 40.0 | 3.52e-01 | 98.2% | 93.8% |
| 4b9dB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.50 | 38.0 | 3.25e-01 | 83.6% | 74.2% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4188237 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.72 | 56.0 | 5.66e-01 | 89.1% | 85.5% |
| 5075465 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.72 | 57.0 | 5.56e-01 | 90.9% | 80.0% |
| 7726 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.71 | 56.0 | 5.56e-01 | 90.9% | 82.8% |
| 3887124 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.69 | 56.0 | 3.93e-01 | 92.7% | 28.6% |
| 5047317 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 56.0 | 4.80e-01 | 90.9% | 57.6% |
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.67 | 59.0 | 5.22e-01 | 100.0% | 81.2% |
| 3649429 | 220.1.1.187 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C | 0.65 | 53.0 | 3.78e-01 | 90.9% | 35.9% |
| 4889666 | 11.2.1.117 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI-PLC-Y | 0.65 | 53.0 | 4.19e-01 | 92.7% | 44.1% |
| 4931272 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.65 | 54.0 | 4.50e-01 | 92.7% | 56.8% |
| 3784861 | 220.1.1.74 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H | 0.64 | 52.0 | 4.00e-01 | 92.7% | 63.1% |
| 3954531 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.63 | 52.0 | 4.41e-01 | 94.5% | 58.9% |
| 4963902 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.63 | 53.0 | 4.34e-01 | 94.5% | 55.0% |
| 3596777 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 47.0 | 3.87e-01 | 90.9% | 45.0% |
| 3705941 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 52.0 | 4.71e-01 | 100.0% | 98.8% |
| 4029631 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.61 | 54.0 | 4.38e-01 | 100.0% | 94.3% |
| 4011588 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.61 | 50.0 | 4.65e-01 | 100.0% | 86.7% |
| 3316055 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 51.0 | 3.35e-01 | 96.4% | 32.2% |
| 3491610 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.61 | 48.0 | 4.03e-01 | 92.7% | 61.9% |
| 4018331 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.60 | 52.0 | 3.79e-01 | 100.0% | 41.2% |
| 3732571 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 40.0 | 3.94e-01 | 89.1% | 65.0% |
| 3895743 | 3615.1.1.7 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 | 0.59 | 47.0 | 3.29e-01 | 89.1% | 27.4% |
| 3701520 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.59 | 40.0 | 4.39e-01 | 81.8% | 97.5% |
| 3714009 | 64.1.1.14 ↗ | beta meanders › WW domain-like › WW domain › WW domain › PF30846 | 0.59 | 41.0 | 4.27e-01 | 96.4% | 82.0% |
| 3516379 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.58 | 49.0 | 3.93e-01 | 94.5% | 70.9% |
| 3432379 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.58 | 48.0 | 4.64e-01 | 100.0% | 90.8% |
| 4208681 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.58 | 50.0 | 4.11e-01 | 98.2% | 95.1% |
| 3171521 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.58 | 41.0 | 4.27e-01 | 89.1% | 84.0% |
| 3861569 | 220.1.1.56 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH | 0.58 | 48.0 | 3.90e-01 | 98.2% | 66.1% |
| 4014194 | 4075.1.1.0 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain | 0.58 | 49.0 | 4.10e-01 | 98.2% | 82.0% |
| 3541856 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.58 | 48.0 | 3.69e-01 | 100.0% | 37.9% |
| 3328983 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.57 | 39.0 | 4.10e-01 | 74.5% | 94.0% |
| 3817114 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.57 | 42.0 | 4.33e-01 | 83.6% | 96.0% |
| 5034195 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.56 | 42.0 | 4.24e-01 | 81.8% | 85.5% |
| 3815611 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.56 | 46.0 | 3.00e-01 | 100.0% | 32.7% |
| 4945111 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 50.0 | 3.31e-01 | 100.0% | 39.7% |
| 3442609 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.56 | 46.0 | 4.57e-01 | 100.0% | 96.7% |
| 3735697 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.56 | 46.0 | 4.22e-01 | 100.0% | 85.0% |
| 3991790 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 45.0 | 3.82e-01 | 98.2% | 73.3% |
| 3452215 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.56 | 45.0 | 4.48e-01 | 100.0% | 100.0% |
| 3440992 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.55 | 41.0 | 4.38e-01 | 81.8% | 97.8% |
| 3938684 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.55 | 42.0 | 3.44e-01 | 92.7% | 52.8% |
| 3211234 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 46.0 | 3.52e-01 | 100.0% | 69.7% |
| 5077400 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 44.0 | 3.60e-01 | 90.9% | 50.0% |
| 3471348 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.54 | 46.0 | 3.02e-01 | 100.0% | 84.8% |
| 3737863 | 708.1.2.11 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 | 0.53 | 38.0 | 3.11e-01 | 76.4% | 41.9% |
| 3329019 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 35.0 | 3.68e-01 | 70.9% | 88.0% |
| 4964806 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.53 | 41.0 | 3.13e-01 | 94.5% | 35.6% |
| 3270076 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.52 | 38.0 | 2.51e-01 | 80.0% | 90.7% |