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MZ496292.1__QXM18726.1__X__00046
Bact-VirMZ496292.1__QXM18726.1__X__00046
Identity
- Accession:
- MZ496292 ↗
- Kingdom:
- phage
Quality
91.5
mean pLDDT
Cluster
View cluster (80 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 10-49_116-134
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.73 | 51.0 | 5.00e-01 | 72.9% | 73.4% |
| 6oi7A01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.69 | 59.0 | 4.17e-01 | 100.0% | 42.3% |
| 3teqB00 | 1.10.287.3550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 53.0 | 4.40e-01 | 83.1% | 72.3% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.67 | 58.0 | 4.05e-01 | 96.6% | 42.6% |
| 3fgrA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.67 | 59.0 | 4.63e-01 | 100.0% | 77.3% |
| 1q9cA01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.67 | 57.0 | 4.31e-01 | 98.3% | 76.2% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 54.0 | 4.96e-01 | 91.5% | 75.9% |
| 4wksC03 | 1.10.1400.10 | Mainly Alpha › Orthogonal Bundle › Penicillin amidase (Acylase) alpha subunit, N-terminal domain › Aminohydrolase, alpha-helical knob region | 0.64 | 57.0 | 4.03e-01 | 100.0% | 46.2% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 45.0 | 4.34e-01 | 74.6% | 100.0% |
| 2jnsA01 | 1.20.1270.220 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 58.0 | 5.19e-01 | 100.0% | 74.1% |
| 3tulB00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.64 | 51.0 | 3.84e-01 | 84.7% | 42.9% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.62 | 50.0 | 4.61e-01 | 88.1% | 67.9% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.62 | 48.0 | 4.62e-01 | 86.4% | 95.6% |
| 2k3oA00 | 1.10.274.60 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain | 0.62 | 53.0 | 4.18e-01 | 100.0% | 82.9% |
| 2mtqA00 | 1.20.58.130 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 45.0 | 4.24e-01 | 84.7% | 67.1% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.59 | 43.0 | 4.52e-01 | 100.0% | 92.3% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.58 | 44.0 | 3.95e-01 | 83.1% | 63.5% |
| 1xwjA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.58 | 51.0 | 3.99e-01 | 100.0% | 56.2% |
| 3jrqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.58 | 46.0 | 3.07e-01 | 93.2% | 21.8% |
| 3t5qG01 | 1.10.150.550 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Arenavirus nucleocapsid protein, head domain | 0.57 | 48.0 | 3.91e-01 | 89.8% | 78.8% |
| 7ahdC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 49.0 | 3.27e-01 | 98.3% | 28.2% |
| 3v53E00 | 1.20.1390.10 | Mainly Alpha › Up-down Bundle › PWI domain › PWI domain | 0.57 | 49.0 | 4.18e-01 | 100.0% | 82.4% |
| 1ecaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 46.0 | 3.67e-01 | 98.3% | 80.9% |
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.56 | 41.0 | 4.17e-01 | 94.9% | 83.1% |
| 1vplA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 47.0 | 3.15e-01 | 98.3% | 28.2% |
| 1vljA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.52 | 45.0 | 3.14e-01 | 100.0% | 28.9% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.52 | 41.0 | 2.99e-01 | 98.3% | 30.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949269 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.79 | 60.0 | 5.27e-01 | 83.1% | 56.5% |
| 3171499 | 11.45.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › IBP (ice-binding protein) RIII_3 domain › IBP (ice-binding protein) RIII_3 domain › EMP70 | 0.78 | 61.0 | 4.38e-01 | 83.1% | 32.3% |
| 5056832 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.75 | 67.0 | 4.86e-01 | 100.0% | 40.6% |
| 3620725 | 5041.1.1.17 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › Periphilin_C | 0.75 | 67.0 | 5.53e-01 | 100.0% | 77.1% |
| 4547615 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.75 | 65.0 | 4.32e-01 | 100.0% | 27.9% |
| 4944375 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.71 | 52.0 | 3.42e-01 | 78.0% | 32.5% |
| 4332494 | 605.1.1.327 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PhoQ_Sensor | 0.70 | 52.0 | 5.18e-01 | 78.0% | 81.7% |
| 3965610 | 3831.1.1.1 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI | 0.70 | 60.0 | 5.42e-01 | 100.0% | 80.0% |
| 3261624 | 3470.1.1.0 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain | 0.69 | 52.0 | 5.55e-01 | 81.4% | 100.0% |
| 3454679 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.69 | 61.0 | 5.82e-01 | 100.0% | 85.7% |
| 4928813 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.69 | 51.0 | 4.74e-01 | 79.7% | 74.7% |
| 4465007 | 3004.1.1.5 ↗ | alpha bundles › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain › Hypothetical protein YfhH, N-terminal domain › FCD | 0.68 | 59.0 | 5.44e-01 | 96.6% | 76.0% |
| 3471215 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 60.0 | 5.56e-01 | 100.0% | 94.7% |
| 4266228 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.68 | 59.0 | 3.66e-01 | 100.0% | 65.4% |
| 4149779 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.67 | 51.0 | 4.24e-01 | 84.7% | 59.1% |
| 3461627 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 57.0 | 5.48e-01 | 100.0% | 88.6% |
| 3940797 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.65 | 46.0 | 4.21e-01 | 78.0% | 56.0% |
| 3389960 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.65 | 47.0 | 4.17e-01 | 76.3% | 57.6% |
| 3462221 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.65 | 45.0 | 3.03e-01 | 72.9% | 46.5% |
| 5010354 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.64 | 48.0 | 4.40e-01 | 83.1% | 87.5% |
| 4998428 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.64 | 55.0 | 4.20e-01 | 96.6% | 42.2% |
| 4191282 | 181.1.1.7 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › NifW | 0.63 | 49.0 | 4.64e-01 | 96.6% | 70.7% |
| 3604282 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.63 | 49.0 | 3.80e-01 | 83.1% | 41.7% |
| 4052367 | 1175.1.1.2 ↗ | alpha complex topology › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › PF26365 | 0.62 | 44.0 | 3.26e-01 | 76.3% | 53.9% |
| 4954907 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.62 | 54.0 | 4.78e-01 | 98.3% | 75.3% |
| 5016145 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.61 | 45.0 | 4.21e-01 | 83.1% | 64.0% |
| 5081190 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.59 | 47.0 | 3.49e-01 | 83.1% | 37.0% |
| 3482882 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.56 | 43.0 | 4.30e-01 | 89.8% | 88.3% |
| 3346814 | 101.1.2.284 ↗ | alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd | 0.55 | 41.0 | 3.54e-01 | 79.7% | 68.9% |
| 3743337 | 3184.1.1.1 ↗ | alpha bundles › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › mRNA 3'-end-processing protein Rna15p hinge domain › CSTF2_hinge | 0.54 | 40.0 | 3.97e-01 | 88.1% | 73.8% |
| 4971143 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.53 | 45.0 | 4.07e-01 | 100.0% | 77.6% |
| 3856788 | 110.1.1.1 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death | 0.52 | 46.0 | 3.89e-01 | 100.0% | 71.0% |
D2
medium
residues 50-115
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.52 | 37.0 | 3.57e-01 | 86.4% | 64.9% |
| 2kz0A01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.51 | 34.0 | 3.41e-01 | 92.4% | 66.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1180647 | 205.1.1.35 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 | 0.61 | 39.0 | 3.79e-01 | 97.0% | 56.6% |
| 3998378 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.53 | 40.0 | 2.63e-01 | 83.3% | 44.2% |
| 4996490 | 207.9.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide | 0.53 | 43.0 | 3.35e-01 | 98.5% | 71.2% |
| 3487101 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.52 | 42.0 | 2.88e-01 | 93.9% | 22.9% |
| 5006910 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.52 | 43.0 | 3.37e-01 | 98.5% | 69.7% |
| 3499228 | 5.1.3.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 | 0.51 | 40.0 | 2.54e-01 | 92.4% | 74.9% |
| 3811724 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.51 | 31.0 | 3.29e-01 | 75.8% | 69.0% |
| 3218266 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.51 | 38.0 | 2.43e-01 | 83.3% | 40.0% |
| 4018860 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 37.0 | 3.07e-01 | 80.3% | 72.8% |
| 3224634 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.50 | 37.0 | 2.39e-01 | 83.3% | 53.2% |