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MZ501063.1__QXV78227.1__bas61_0098__00098

Bact-Vir

MZ501063.1__QXV78227.1__bas61_0098__00098

Identity

Accession:
MZ501063 ↗
Kingdom:
phage

Quality

65.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 57-103
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sqjB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.75 63.0 3.78e-01 93.6% 16.8%
6p2lA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.74 63.0 3.82e-01 95.7% 42.4%
3da7E00 3.40.20.20 Alpha Beta › 3-Layer(aba) Sandwich › Severin › 0.73 63.0 4.98e-01 100.0% 83.5%
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.73 65.0 3.81e-01 100.0% 87.2%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.72 59.0 3.37e-01 91.5% 13.6%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.72 59.0 3.37e-01 91.5% 13.8%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 50.0 4.25e-01 76.6% 47.4%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.68 60.0 3.59e-01 100.0% 85.8%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 57.0 4.23e-01 100.0% 96.1%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.65 53.0 4.05e-01 95.7% 63.9%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.64 44.0 3.70e-01 72.3% 44.6%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 47.0 3.54e-01 85.1% 34.3%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.22e-01 100.0% 91.7%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 51.0 3.90e-01 97.9% 44.4%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.63 52.0 3.42e-01 100.0% 78.0%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.11e-01 93.6% 17.4%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.62 52.0 4.16e-01 100.0% 75.2%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 48.0 3.76e-01 89.4% 73.5%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 49.0 3.87e-01 93.6% 84.3%
6hgcA01 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.61 51.0 3.50e-01 100.0% 81.2%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 41.0 3.08e-01 70.2% 50.8%
4am6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 46.0 3.11e-01 89.4% 73.8%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.60 45.0 3.92e-01 87.2% 75.6%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.60 49.0 3.40e-01 100.0% 84.7%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.59 49.0 3.74e-01 95.7% 81.2%
4fo0A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 44.0 3.16e-01 87.2% 65.7%
3lm2A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 45.0 3.74e-01 89.4% 95.9%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 46.0 4.15e-01 93.6% 60.9%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 49.0 3.06e-01 100.0% 87.2%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 3.54e-01 100.0% 97.1%
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 43.0 2.74e-01 91.5% 26.2%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 46.0 4.05e-01 97.9% 72.4%
2r61A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.63e-01 89.4% 53.4%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 41.0 3.95e-01 85.1% 84.5%
1ynjJ02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 39.0 3.55e-01 100.0% 56.5%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.55 42.0 3.26e-01 89.4% 78.7%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 43.0 3.43e-01 91.5% 61.5%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 3.53e-01 83.0% 54.1%
4nkbB02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 41.0 3.46e-01 89.4% 67.8%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 42.0 3.37e-01 91.5% 61.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 3.59e-01 100.0% 77.1%
1vq8E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 41.0 3.54e-01 89.4% 50.6%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.89e-01 100.0% 80.0%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 40.0 3.44e-01 87.2% 48.1%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 39.0 3.59e-01 87.2% 59.7%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 40.0 3.43e-01 87.2% 47.6%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.93e-01 83.0% 88.9%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 46.0 4.07e-01 100.0% 79.4%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.16e-01 87.2% 82.4%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 42.0 3.35e-01 100.0% 86.6%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 36.0 2.41e-01 76.6% 16.6%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 40.0 3.36e-01 87.2% 49.4%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 39.0 3.22e-01 85.1% 96.6%
6q3wD01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 43.0 2.96e-01 100.0% 92.5%
4a17E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 39.0 3.29e-01 87.2% 48.2%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.99e-01 100.0% 90.4%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 3.23e-01 89.4% 50.0%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 2.82e-01 93.6% 35.0%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 2.87e-01 93.6% 92.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5038730 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 64.0 3.67e-01 100.0% 80.0%
3845022 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.70 55.0 3.11e-01 89.4% 7.4%
3718492 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 59.0 3.74e-01 100.0% 18.8%
4002261 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 54.0 3.10e-01 89.4% 13.6%
3587925 220.1.1.242 beta barrels › PH domain-like › PH domain-like › PH domain-like › EbsA 0.66 51.0 4.48e-01 89.4% 65.3%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 48.0 4.21e-01 85.1% 84.0%
4971601 241.14.1.0 a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.63 46.0 4.06e-01 78.7% 58.6%
3404744 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 53.0 3.18e-01 100.0% 86.3%
4021107 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 52.0 3.37e-01 97.9% 39.2%
3487711 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 53.0 3.25e-01 100.0% 88.6%
None 0.61 50.0 3.21e-01 93.6% 28.5%
4969727 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.61 44.0 3.10e-01 91.5% 22.7%
3914165 5.1.4.269 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.61 51.0 3.07e-01 100.0% 77.5%
4947834 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.68e-01 87.2% 67.6%
5064802 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 39.0 3.21e-01 70.2% 34.4%
3448051 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 50.0 3.21e-01 95.7% 44.5%
3814457 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.60 50.0 3.12e-01 100.0% 83.2%
5058682 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.60 40.0 2.65e-01 70.2% 81.4%
4943886 230.1.1.0 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like 0.60 45.0 3.21e-01 91.5% 25.0%
5044748 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.71e-01 89.4% 68.6%
3821607 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.59 50.0 3.03e-01 100.0% 76.8%
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.59 45.0 4.28e-01 89.4% 83.3%
5014250 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 3.81e-01 85.1% 51.2%
3209881 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.58 46.0 2.64e-01 91.5% 9.6%
3453949 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 51.0 3.08e-01 100.0% 87.8%
4098275 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 44.0 3.73e-01 87.2% 47.5%
3786078 109.4.1.1764 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.58 44.0 2.59e-01 89.4% 39.2%
4963351 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 46.0 3.54e-01 93.6% 57.5%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.00e-01 76.6% 76.0%
222713 391.1.1.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › fn1 0.56 40.0 4.07e-01 76.6% 86.7%
3937459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 3.72e-01 97.9% 86.0%
3838921 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.56 42.0 3.58e-01 89.4% 48.8%
4558826 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.56 42.0 3.62e-01 89.4% 50.0%
4993868 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 40.0 3.56e-01 80.9% 56.2%
3236942 192.4.1.52 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › DDT, WSD 0.55 45.0 2.69e-01 95.7% 13.4%
4929896 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.55 41.0 3.58e-01 87.2% 50.0%
5076084 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.54 40.0 2.92e-01 89.4% 25.5%
4935682 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 3.83e-01 89.4% 70.9%
4968717 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.54 40.0 3.49e-01 80.9% 50.7%
4932407 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 41.0 3.52e-01 87.2% 50.0%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 3.86e-01 80.9% 84.0%
4935681 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.86e-01 100.0% 80.0%
4953898 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 40.0 3.12e-01 91.5% 43.2%
375944 4100.1.1.2 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › PHD_like 0.53 41.0 3.43e-01 89.4% 98.9%
5020098 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.52 40.0 3.61e-01 89.4% 60.0%
5028109 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.52 40.0 3.49e-01 89.4% 53.3%
3736764 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.52 38.0 2.70e-01 83.0% 32.2%
5035671 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.52 39.0 3.19e-01 89.4% 40.0%
4062751 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.52 38.0 3.60e-01 83.0% 66.7%
4930179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 39.0 3.87e-01 100.0% 83.6%
3387114 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.52 38.0 3.19e-01 87.2% 43.2%
3969312 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.51 38.0 3.49e-01 87.2% 57.1%
397140 2.2.1.0 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins 0.51 38.0 3.25e-01 83.0% 50.0%
5000498 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.51 39.0 3.77e-01 93.6% 85.0%
4188283 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.50 37.0 3.29e-01 87.2% 70.0%