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MZ501083.1__QXV81283.1__bas53_0160__00160

Bact-Vir

MZ501083.1__QXV81283.1__bas53_0160__00160

Identity

Accession:
MZ501083 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-61
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cw7B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.73 51.0 4.28e-01 79.6% 42.6%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.65 53.0 4.46e-01 94.4% 95.9%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 51.0 4.13e-01 92.6% 73.0%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 4.32e-01 100.0% 79.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 4.77e-01 100.0% 67.9%
2vgnA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.63 47.0 3.68e-01 83.3% 76.4%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.09e-01 100.0% 71.2%
2re2A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.62 47.0 3.71e-01 83.3% 69.5%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 47.0 3.60e-01 85.2% 82.6%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.61 53.0 3.56e-01 100.0% 28.6%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.61 47.0 4.26e-01 87.0% 93.4%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.61 48.0 3.48e-01 92.6% 42.2%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.60 52.0 3.51e-01 100.0% 34.1%
2d9qB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 41.0 3.47e-01 72.2% 79.8%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.85e-01 100.0% 96.1%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.60 52.0 4.57e-01 100.0% 85.4%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.60 42.0 3.37e-01 77.8% 36.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.65e-01 100.0% 87.7%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.59 45.0 3.57e-01 83.3% 92.6%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.59 48.0 3.41e-01 92.6% 66.5%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.58 41.0 4.34e-01 79.6% 91.3%
3nqzA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 3.62e-01 75.9% 57.1%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.58 41.0 3.68e-01 75.9% 54.5%
1aogB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 3.04e-01 88.9% 89.8%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 45.0 3.97e-01 92.6% 74.4%
2cvhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 2.98e-01 85.2% 89.7%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 43.0 4.23e-01 92.6% 77.0%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 42.0 3.06e-01 87.0% 49.4%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.56 40.0 3.72e-01 75.9% 98.5%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 48.0 4.62e-01 100.0% 93.8%
4af1A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.56 41.0 3.25e-01 81.5% 79.4%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.30e-01 100.0% 56.3%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.86e-01 96.3% 15.2%
1stzA03 3.30.390.60 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 0.55 42.0 3.58e-01 81.5% 80.9%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.55 40.0 3.19e-01 81.5% 68.0%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 42.0 3.98e-01 92.6% 85.9%
3nyiA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.54 40.0 3.11e-01 83.3% 91.2%
1lc5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 45.0 3.56e-01 100.0% 58.4%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.91e-01 100.0% 76.2%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 38.0 3.44e-01 83.3% 100.0%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.10e-01 100.0% 63.0%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.53 43.0 3.35e-01 98.1% 85.2%
4pfyA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.52 41.0 3.14e-01 92.6% 68.0%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 41.0 3.18e-01 90.7% 70.8%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 3.03e-01 85.2% 75.7%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 44.0 2.92e-01 98.1% 95.2%
3dlbA04 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 42.0 3.09e-01 98.1% 56.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.52 43.0 3.85e-01 98.1% 65.0%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.47e-01 100.0% 91.0%
3qt2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.32e-01 85.2% 87.6%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 2.96e-01 96.3% 81.9%
2d0oB00 3.40.50.10150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › B12-dependent dehydatase associated subunit 0.51 42.0 3.50e-01 98.1% 88.0%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 42.0 3.62e-01 100.0% 66.3%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 40.0 2.46e-01 100.0% 34.8%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 40.0 3.48e-01 90.7% 79.8%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4963446 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.88 74.0 6.93e-01 100.0% 75.4%
5012352 4312.1.1.15 a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.74 62.0 5.28e-01 92.6% 62.4%
3239417 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.72 55.0 4.13e-01 83.3% 47.4%
3788193 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.70 49.0 3.49e-01 74.1% 29.0%
4081078 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.69 53.0 4.18e-01 85.2% 40.9%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.69 51.0 5.09e-01 100.0% 80.0%
4280256 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 46.0 4.79e-01 100.0% 80.0%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.66 55.0 4.43e-01 96.3% 72.7%
4370678 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.66 53.0 3.28e-01 92.6% 25.4%
4640515 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.65 45.0 4.68e-01 100.0% 80.0%
4887383 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 45.0 4.90e-01 72.2% 95.3%
5039793 219.1.1.77 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF3335 0.65 56.0 3.83e-01 100.0% 32.2%
4545039 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.65 45.0 4.17e-01 74.1% 62.9%
3526272 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.64 54.0 4.07e-01 100.0% 59.3%
3996279 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.64 53.0 4.72e-01 100.0% 65.0%
4193599 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.47e-01 100.0% 59.0%
2321269 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.63 54.0 4.77e-01 100.0% 67.9%
4002813 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 51.0 3.98e-01 100.0% 67.9%
3491795 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 53.0 4.25e-01 100.0% 81.7%
3948255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 3.85e-01 100.0% 38.5%
3457561 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.62 53.0 3.79e-01 100.0% 84.1%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.80e-01 100.0% 81.4%
3575745 5.1.4.90 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Itfg2 0.62 52.0 3.21e-01 100.0% 29.1%
3916003 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.62 51.0 4.17e-01 100.0% 63.5%
3965134 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 53.0 4.23e-01 100.0% 63.5%
4440288 325.1.7.4 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H 0.61 53.0 4.10e-01 100.0% 86.9%
5044391 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.45e-01 74.1% 96.0%
3742908 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.61 51.0 4.39e-01 100.0% 86.3%
3228340 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.61 51.0 4.33e-01 100.0% 90.0%
4014194 4075.1.1.0 a+b complex topology › RGC domain › RGC domain › RGC domain 0.61 52.0 4.35e-01 100.0% 91.0%
3722019 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.61 50.0 3.80e-01 100.0% 96.6%
3473183 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 49.0 3.55e-01 92.6% 67.1%
4538990 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 45.0 4.13e-01 88.9% 60.0%
4024915 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.60 48.0 4.55e-01 100.0% 75.4%
3264756 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.60 52.0 4.31e-01 100.0% 90.0%
5018514 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 3.90e-01 100.0% 100.0%
862 9.4.1.1 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.60 52.0 4.57e-01 100.0% 85.4%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.60 49.0 4.47e-01 100.0% 73.8%
4113552 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 45.0 4.00e-01 96.3% 56.2%
5047317 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 45.0 4.01e-01 87.0% 76.5%
959119 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.59 47.0 4.74e-01 100.0% 92.6%
3255777 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.59 50.0 4.27e-01 100.0% 90.5%
3392759 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 48.0 2.96e-01 94.4% 30.1%
4342833 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 44.0 3.59e-01 81.5% 79.0%
3708068 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 48.0 3.16e-01 94.4% 31.8%
3242109 5.1.4.172 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.58 48.0 2.74e-01 92.6% 19.0%
5001559 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 43.0 3.93e-01 81.5% 76.0%
4193896 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 44.0 3.70e-01 83.3% 48.4%
4230630 2484.1.1.11 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L18p 0.58 49.0 3.96e-01 100.0% 84.1%
3254501 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 45.0 2.94e-01 90.7% 45.3%
3739384 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.58 47.0 4.05e-01 100.0% 84.8%
4944430 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.58 51.0 4.48e-01 100.0% 90.0%
4065004 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 43.0 3.47e-01 81.5% 79.1%
4014881 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.69e-01 100.0% 88.3%
3250597 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 48.0 3.90e-01 100.0% 60.0%
3933015 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 43.0 4.41e-01 88.9% 95.9%
3166679 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 44.0 2.77e-01 96.3% 15.4%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.06e-01 100.0% 84.7%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.12e-01 100.0% 88.7%
3187543 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.82e-01 100.0% 72.3%
3934655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 48.0 4.13e-01 100.0% 97.6%
136506 4075.1.1.2 a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 0.53 44.0 3.74e-01 100.0% 94.9%
4228038 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.52 37.0 2.44e-01 77.8% 25.9%
3519329 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.09e-01 92.6% 58.6%
4991059 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 34.0 3.52e-01 70.4% 100.0%
3743557 7556.1.1.1 a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.50 39.0 2.49e-01 92.6% 55.5%
3224924 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 36.0 2.82e-01 88.9% 32.6%