←Back to structures

MZ501106.1__QXV84948.1__bas43_0212__00212

Bact-Vir

MZ501106.1__QXV84948.1__bas43_0212__00212

Identity

Accession:
MZ501106 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_TadeuszReichstein

TaxID: 2852015

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-40
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 46.0 3.83e-01 71.1% 50.0%
4gt6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.67 47.0 2.73e-01 76.3% 23.0%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 45.0 2.91e-01 71.1% 15.7%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 49.0 3.69e-01 84.2% 59.6%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 44.0 3.68e-01 71.1% 50.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 43.0 3.61e-01 71.1% 49.3%
3apqA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.64 51.0 3.79e-01 100.0% 71.6%
3mazA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 50.0 3.76e-01 89.5% 61.6%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.63 54.0 3.60e-01 100.0% 28.8%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 48.0 3.53e-01 92.1% 65.8%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 47.0 3.56e-01 92.1% 52.3%
3ckiB00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 43.0 3.23e-01 81.6% 77.7%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 47.0 3.24e-01 100.0% 88.1%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.69e-01 92.1% 58.6%
4pyrA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 41.0 2.74e-01 100.0% 16.9%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 3.11e-01 100.0% 90.5%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 43.0 2.64e-01 86.8% 73.8%
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.58 41.0 3.29e-01 76.3% 58.5%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.58 41.0 3.65e-01 81.6% 51.6%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.56 42.0 3.02e-01 92.1% 62.3%
5ngyA01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.56 42.0 3.23e-01 89.5% 48.1%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.56 43.0 2.78e-01 86.8% 35.4%
6p8iA04 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.56 41.0 3.18e-01 86.8% 33.7%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.55 45.0 3.76e-01 100.0% 86.7%
1nijA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 45.0 2.84e-01 97.4% 73.1%
1wxcB01 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.53 42.0 3.77e-01 100.0% 82.3%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 37.0 3.29e-01 86.8% 61.1%
1okjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 3.26e-01 97.4% 67.4%
1rl4B00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.52 43.0 2.94e-01 100.0% 91.7%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 39.0 3.23e-01 100.0% 71.7%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 2.33e-01 100.0% 88.7%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.80e-01 100.0% 71.5%
1ceeB00 3.90.810.10 Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain 0.51 35.0 3.12e-01 73.7% 47.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230533 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 52.0 4.92e-01 73.7% 60.0%
4110878 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 49.0 4.73e-01 81.6% 60.0%
3535695 1021.1.1.2 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD 0.70 49.0 3.67e-01 76.3% 77.9%
5043685 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 4.45e-01 89.5% 80.0%
3057485 71.1.1.10 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 0.68 46.0 3.10e-01 71.1% 17.5%
3209304 6043.1.1.0 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.65 50.0 4.05e-01 92.1% 46.4%
3743011 63.1.1.4 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH_1 0.65 45.0 3.17e-01 86.8% 24.3%
4040255 101.1.9.92 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF5525 0.64 46.0 3.04e-01 78.9% 46.1%
3315374 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.64 45.0 4.69e-01 76.3% 91.4%
4983508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.15e-01 94.7% 100.0%
5076406 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 3.64e-01 81.6% 56.5%
4949048 223.1.1.171 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_3-Cache_2 0.63 44.0 3.07e-01 76.3% 22.1%
3861402 148.1.1.86 ↗ alpha arrays › Histone-like › Histone-related › Histone › DUF5525 0.62 40.0 2.64e-01 92.1% 14.5%
5056777 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 4.17e-01 100.0% 91.3%
4301346 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 42.0 2.88e-01 73.7% 45.2%
5058484 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 45.0 3.80e-01 84.2% 62.9%
4612221 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.60 47.0 3.11e-01 100.0% 33.2%
4973029 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 41.0 4.12e-01 78.9% 70.0%
147056 3268.1.1.1 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › XdhC_CoxI 0.60 40.0 3.01e-01 71.1% 30.9%
3595599 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 46.0 3.61e-01 100.0% 76.0%
3929201 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 42.0 3.93e-01 76.3% 67.3%
4473548 304.51.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.58 52.0 3.03e-01 100.0% 20.3%
3252243 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.58 44.0 3.27e-01 89.5% 47.8%
3279985 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 48.0 3.27e-01 100.0% 29.3%
4990890 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 46.0 3.18e-01 97.4% 95.0%
4975637 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.57 50.0 3.93e-01 100.0% 50.0%
4028372 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.56 42.0 3.69e-01 100.0% 72.0%
3297410 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 45.0 3.81e-01 97.4% 82.6%
4295643 2003.1.2.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 42.0 2.81e-01 100.0% 74.6%
3311132 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 42.0 3.44e-01 94.7% 63.5%
3301563 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 44.0 3.37e-01 97.4% 55.6%
3708219 331.23.1.4 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.54 43.0 3.61e-01 92.1% 58.6%
5058486 2004.1.1.88 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW 0.53 41.0 2.76e-01 100.0% 38.5%
4979633 4076.3.1.8 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.53 38.0 3.23e-01 73.7% 64.6%
3656669 207.1.1.245 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, LRR_At5g56370, DUF7885 0.53 43.0 2.36e-01 92.1% 10.3%
4982613 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 41.0 3.63e-01 94.7% 64.6%
1281127 207.1.1.21 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.53 38.0 2.70e-01 86.8% 59.2%
4956745 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.52 37.0 3.41e-01 73.7% 84.0%
4930200 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.52 38.0 2.77e-01 86.8% 33.1%
D2 medium residues 49-91
PDB