←Back to structures

MZ501263.1__QZA69899.1__043JT007_113__00113

Bact-Vir

MZ501263.1__QZA69899.1__043JT007_113__00113

Identity

Accession:
MZ501263 ↗
Kingdom:
phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Nitunavirus› Bacillus_phage_043JT007

TaxID: 2869565

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: rep: OM982669.1__UPI12167.1__X__00189__D2-69
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 61.0 6.20e-01 100.0% 90.9%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.72 62.0 4.93e-01 95.5% 94.7%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 55.0 5.68e-01 100.0% 95.2%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 39.0 3.80e-01 89.6% 53.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 52.0 5.42e-01 98.5% 98.3%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.74e-01 97.0% 75.7%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.89e-01 95.5% 89.1%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.62e-01 100.0% 97.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.64 34.0 3.32e-01 79.1% 44.4%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.64 46.0 4.93e-01 100.0% 87.9%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.27e-01 97.0% 95.9%
1ssfA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.70e-01 98.5% 89.1%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.65e-01 98.5% 70.4%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 42.0 4.71e-01 95.5% 95.8%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 5.45e-01 100.0% 98.4%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.62 44.0 3.52e-01 76.1% 48.9%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.60 43.0 3.39e-01 76.1% 49.3%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 49.0 4.92e-01 98.5% 92.6%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.59 45.0 4.44e-01 94.0% 78.1%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.26e-01 100.0% 75.4%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.58 50.0 4.20e-01 100.0% 90.9%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.58 46.0 4.12e-01 89.6% 92.8%
1rvjH02 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.57 48.0 3.83e-01 92.5% 54.5%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 42.0 2.94e-01 82.1% 91.9%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 46.0 3.81e-01 98.5% 96.4%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.51e-01 97.0% 93.5%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.56 42.0 3.99e-01 91.0% 68.4%
4n9jA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 40.0 3.46e-01 100.0% 48.6%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.88e-01 100.0% 89.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.24e-01 100.0% 77.9%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.78e-01 98.5% 98.4%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.64e-01 100.0% 84.7%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.52 36.0 3.80e-01 100.0% 86.2%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.52 42.0 3.18e-01 89.6% 58.3%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.52 41.0 3.52e-01 91.0% 76.9%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.93e-01 92.5% 53.8%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.25e-01 92.5% 54.1%
2v3aA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.40e-01 92.5% 87.4%
2jmbA00 2.40.128.290 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 0.51 40.0 3.86e-01 88.1% 98.7%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 3.22e-01 94.0% 46.4%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.51e-01 92.5% 94.9%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 39.0 2.73e-01 85.1% 93.4%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 3.19e-01 94.0% 46.4%
2if6B00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.50 44.0 3.27e-01 100.0% 37.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4153553 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 46.0 5.41e-01 92.5% 93.3%
157818 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 61.0 5.48e-01 100.0% 67.0%
3579728 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 59.0 5.82e-01 100.0% 87.1%
3482676 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.99e-01 98.5% 100.0%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 57.0 5.69e-01 100.0% 87.1%
3573620 4.1.1.318 ↗ beta barrels › SH3 › SH3 › SH3 › PF26085 0.69 52.0 5.48e-01 92.5% 91.7%
5051419 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 40.0 4.36e-01 89.6% 70.9%
3211367 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 57.0 5.13e-01 100.0% 67.8%
3924337 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.79e-01 98.5% 98.3%
3995675 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 55.0 5.78e-01 97.0% 100.0%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 45.0 4.94e-01 97.0% 94.0%
3513923 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.19e-01 100.0% 78.7%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 54.0 5.35e-01 98.5% 85.7%
3427044 4.1.1.36 ↗ beta barrels › SH3 › SH3 › SH3 › FeThRed_A 0.66 56.0 5.13e-01 95.5% 84.4%
3472332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.85e-01 98.5% 89.1%
4314982 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.65 44.0 4.07e-01 70.1% 97.6%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.26e-01 97.0% 90.8%
4043121 4.1.1.36 ↗ beta barrels › SH3 › SH3 › SH3 › FeThRed_A 0.64 54.0 5.33e-01 97.0% 95.9%
4091771 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 5.04e-01 97.0% 90.0%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 54.0 5.39e-01 100.0% 92.9%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.63 48.0 4.41e-01 97.0% 62.2%
4536756 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.63 43.0 4.00e-01 71.6% 95.3%
1826884 4.1.1.84 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_7 0.62 53.0 5.16e-01 97.0% 86.3%
1673571 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.62 55.0 5.34e-01 100.0% 89.5%
4602101 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.61 53.0 5.37e-01 100.0% 100.0%
5039349 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 5.14e-01 95.5% 100.0%
3406792 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.25e-01 76.1% 75.7%
4512566 2.1.1.60 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RsgI_N 0.60 36.0 4.19e-01 83.6% 88.9%
3387984 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.60 44.0 4.05e-01 77.6% 88.2%
5014724 295.1.1.51 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.60 46.0 4.04e-01 83.6% 88.0%
5027131 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 48.0 4.99e-01 92.5% 98.3%
4446467 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.59 48.0 4.88e-01 100.0% 93.8%
5066882 56.2.1.0 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.59 41.0 4.64e-01 88.1% 100.0%
154175 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.58 48.0 3.96e-01 94.0% 86.9%
3742938 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.58 42.0 4.33e-01 92.5% 81.5%
3244907 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 51.0 4.62e-01 100.0% 83.3%
4452140 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.57 46.0 3.97e-01 94.0% 98.3%
4176722 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.57 45.0 4.02e-01 89.6% 89.0%
4541708 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.56 41.0 3.51e-01 80.6% 50.4%
3624793 2.1.1.274 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF7930 0.54 43.0 4.05e-01 85.1% 95.0%
4071824 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.54 44.0 4.25e-01 100.0% 80.0%
4960065 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 42.0 2.84e-01 86.6% 63.8%
3274851 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.36e-01 73.1% 98.9%
3696056 220.1.1.195 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_fung_RdRP 0.53 45.0 3.60e-01 100.0% 77.2%
4987919 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.51 38.0 4.07e-01 88.1% 94.8%
4952379 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 43.0 2.90e-01 95.5% 82.3%
5066751 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.51 42.0 2.74e-01 95.5% 48.2%
5058747 56.2.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.50 38.0 4.00e-01 88.1% 93.1%