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MZ501267.1__QZA70538.1__AH04_55__00054

Bact-Vir

MZ501267.1__QZA70538.1__AH04_55__00054

Identity

Accession:
MZ501267 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Meadowvirus› Erwinia_phage_AH04

TaxID: 2869569

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-120
PDB
Domain cluster: rep: NC_007623.1__YP_418050.1__PPEV_gp017__00017__D2-111
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 3.68e-01 73.9% 63.5%
1apyB00 3.60.20.30 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › (Glycosyl)asparaginase 0.57 40.0 3.78e-01 72.3% 68.1%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 37.0 4.12e-01 77.3% 86.8%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 4.10e-01 73.9% 92.2%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 32.0 3.66e-01 77.3% 81.7%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 32.0 3.60e-01 78.2% 77.6%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 32.0 3.66e-01 77.3% 81.9%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.53 39.0 3.76e-01 76.5% 88.1%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 20.0 3.05e-01 74.8% 97.4%
4k3bA04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 31.0 3.59e-01 77.3% 85.9%
2p8jA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 3.39e-01 81.5% 73.8%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 33.0 3.52e-01 99.2% 71.0%
1gd8A00 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.52 37.0 3.89e-01 74.8% 99.0%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 24.0 3.42e-01 100.0% 93.0%
8evkA01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.51 37.0 3.87e-01 75.6% 85.2%
6j09A02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.51 31.0 3.55e-01 77.3% 88.5%
4qkyA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.50 30.0 3.66e-01 100.0% 94.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3565365 5054.1.1.110 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Pecanex_C 0.62 45.0 3.68e-01 75.6% 90.8%
5048993 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 37.0 3.62e-01 73.1% 56.2%
5078891 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.60 30.0 3.98e-01 98.3% 98.2%
3272395 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.59 45.0 3.04e-01 78.2% 30.7%
5032176 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.59 27.0 3.57e-01 99.2% 81.7%
1687153 3962.2.1.1 ↗ alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › Helical domain in type ISP restriction-modification enzymes › Helical domain in type ISP restriction-modification enzymes › ISP_coupler 0.57 48.0 4.54e-01 95.8% 95.3%
3038102 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.56 28.0 3.71e-01 97.5% 98.2%
3339933 3346.1.1.1 ↗ a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N 0.55 41.0 3.25e-01 79.8% 85.8%
3387642 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.53 33.0 3.87e-01 100.0% 91.3%
3646394 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.52 42.0 4.04e-01 86.6% 80.7%
3684538 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 3.54e-01 78.2% 71.2%
4673175 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.52 30.0 3.47e-01 77.3% 82.5%
3481547 101.1.2.68 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.52 38.0 3.54e-01 76.5% 72.7%
4085807 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.52 33.0 3.82e-01 100.0% 90.6%
1261966 3121.1.1.1 ↗ a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.51 30.0 3.37e-01 78.2% 75.0%
5044501 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 35.0 3.68e-01 99.2% 77.3%