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MZ501267.1__QZA70711.1__AH04_238__00237

Bact-Vir

MZ501267.1__QZA70711.1__AH04_238__00237

Identity

Accession:
MZ501267 ↗
Kingdom:
phage

Quality

88.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Meadowvirus› Erwinia_phage_AH04

TaxID: 2869569

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-80
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 49.0 3.98e-01 90.0% 38.8%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 50.0 4.15e-01 88.6% 42.6%
1yqzA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.69 44.0 3.82e-01 70.0% 42.6%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 52.0 4.26e-01 88.6% 44.3%
1g5hA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.67 51.0 3.42e-01 100.0% 20.1%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 50.0 3.92e-01 88.6% 37.8%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 49.0 4.01e-01 90.0% 41.5%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 49.0 4.03e-01 88.6% 43.2%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 4.01e-01 88.6% 41.7%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 3.88e-01 88.6% 37.9%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 50.0 4.10e-01 88.6% 44.4%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 3.78e-01 88.6% 35.3%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 49.0 3.94e-01 90.0% 41.5%
3ff2A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 45.0 3.87e-01 85.7% 45.3%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 46.0 3.80e-01 88.6% 42.3%
1of5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 48.0 3.83e-01 94.3% 39.0%
4fx9A03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.63 43.0 3.71e-01 80.0% 44.2%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 3.82e-01 90.0% 43.4%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 3.88e-01 88.6% 44.9%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 49.0 4.09e-01 87.1% 100.0%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 3.80e-01 88.6% 44.7%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 47.0 3.97e-01 88.6% 47.9%
3cgbA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.61 41.0 3.63e-01 80.0% 45.5%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 3.67e-01 90.0% 40.6%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 45.0 3.80e-01 90.0% 45.3%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 52.0 3.98e-01 100.0% 44.8%
2cduA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.60 41.0 3.60e-01 80.0% 45.1%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.60 41.0 3.21e-01 72.9% 45.3%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 3.65e-01 90.0% 42.2%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.59 40.0 3.32e-01 88.6% 37.0%
7by6B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.59 51.0 3.54e-01 95.7% 96.1%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.59 48.0 3.52e-01 94.3% 36.2%
1nhpA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.59 40.0 3.52e-01 78.6% 45.1%
1s3rA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.59 38.0 4.19e-01 75.7% 88.7%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 43.0 2.86e-01 80.0% 33.9%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.58 34.0 2.95e-01 72.9% 37.4%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.58 46.0 3.56e-01 88.6% 47.9%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 51.0 4.19e-01 100.0% 82.9%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.58 43.0 3.99e-01 88.6% 62.2%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.60e-01 88.6% 42.6%
2rhqB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.57 50.0 3.63e-01 98.6% 96.1%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 51.0 3.95e-01 100.0% 85.6%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.56 39.0 4.32e-01 88.6% 92.9%
3kd9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 3.06e-01 87.1% 47.8%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.55 44.0 3.63e-01 90.0% 49.6%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.92e-01 95.7% 85.0%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.29e-01 88.6% 46.5%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 37.0 2.82e-01 74.3% 27.6%
3icsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.92e-01 87.1% 47.7%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.53 46.0 3.91e-01 100.0% 58.5%
3n72A00 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.53 46.0 3.68e-01 100.0% 50.3%
4mh4A02 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.53 47.0 4.26e-01 98.6% 98.9%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 36.0 2.69e-01 71.4% 27.9%
6pfzD02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.87e-01 91.4% 52.1%
1w0pA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 42.0 2.75e-01 100.0% 18.0%
1usyC00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 44.0 2.99e-01 98.6% 43.8%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 37.0 3.33e-01 80.0% 84.3%
6gdxA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.36e-01 82.9% 82.2%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3959349 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.71 54.0 4.36e-01 88.6% 42.5%
5003871 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.69 50.0 4.06e-01 88.6% 39.3%
3694950 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 49.0 3.88e-01 88.6% 36.6%
3970009 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 50.0 3.81e-01 88.6% 33.1%
4017102 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.67 47.0 3.86e-01 88.6% 40.8%
4963974 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.66 56.0 3.64e-01 95.7% 22.1%
4944561 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.66 53.0 4.86e-01 94.3% 71.0%
5073695 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.66 56.0 5.07e-01 100.0% 73.0%
4419134 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.66 54.0 3.51e-01 88.6% 21.7%
3452042 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.65 47.0 5.15e-01 88.6% 98.2%
3647546 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.65 47.0 5.14e-01 88.6% 98.2%
3588474 243.1.1.17 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.64 46.0 3.99e-01 88.6% 46.7%
3285952 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.63 46.0 3.82e-01 84.3% 42.3%
3255279 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 55.0 3.41e-01 100.0% 56.8%
4994741 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.62 42.0 3.46e-01 80.0% 38.3%
3584211 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 53.0 4.29e-01 100.0% 84.1%
3698353 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 47.0 3.92e-01 88.6% 46.4%
5022156 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.61 45.0 3.68e-01 90.0% 40.6%
1674783 243.1.1.15 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › T4BSS_DotI_IcmL 0.61 48.0 3.92e-01 90.0% 44.6%
3278323 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.61 45.0 3.71e-01 90.0% 43.1%
3584227 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.61 48.0 3.86e-01 88.6% 66.9%
3952458 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 45.0 3.76e-01 90.0% 43.8%
4938778 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.60 41.0 2.87e-01 71.4% 21.8%
3320639 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.60 42.0 2.97e-01 72.9% 84.5%
4152363 243.1.1.115 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29733 0.60 45.0 3.85e-01 90.0% 47.2%
3262201 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 44.0 3.56e-01 88.6% 38.6%
4643780 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.59 49.0 3.58e-01 91.4% 95.4%
3968185 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.59 50.0 3.09e-01 94.3% 56.8%
3492229 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 44.0 4.02e-01 91.4% 60.0%
5059048 243.1.1.13 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.59 44.0 3.76e-01 90.0% 47.2%
3875809 4051.1.1.2 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.59 46.0 3.69e-01 100.0% 39.4%
3418267 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.59 42.0 3.61e-01 78.6% 69.2%
4940579 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.58 50.0 3.74e-01 97.1% 97.3%
4025861 4051.1.1.1 ↗ a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.58 48.0 3.74e-01 100.0% 40.0%
4320728 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.58 50.0 3.59e-01 97.1% 90.5%
4943061 244.2.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.58 40.0 3.38e-01 80.0% 40.8%
3788029 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.58 50.0 3.45e-01 97.1% 31.2%
3216163 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 42.0 3.87e-01 80.0% 60.0%
1176784 244.2.1.1 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › Pyr_redox_dim 0.57 38.0 3.24e-01 74.3% 39.7%
4526524 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.57 48.0 3.50e-01 98.6% 88.6%
3612373 109.4.1.438 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CHAT 0.57 45.0 3.23e-01 88.6% 72.3%
3481564 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 42.0 4.05e-01 85.7% 71.2%
3344404 220.1.1.182 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › RDR6_2nd 0.56 45.0 3.41e-01 88.6% 43.4%
4440592 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.56 43.0 3.09e-01 85.7% 85.3%
4926981 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.56 45.0 3.78e-01 88.6% 61.6%
3615332 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.56 41.0 2.71e-01 80.0% 37.7%
4301468 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.56 47.0 3.39e-01 95.7% 91.9%
5012323 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 46.0 2.87e-01 91.4% 51.9%
3597976 2484.8.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.56 44.0 3.15e-01 87.1% 71.6%
4979678 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.55 44.0 2.92e-01 94.3% 74.0%
4945294 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.55 48.0 3.59e-01 100.0% 94.4%
4121480 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.55 47.0 3.45e-01 100.0% 91.6%
4975302 314.1.1.0 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.55 48.0 3.55e-01 100.0% 93.0%
3255418 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.55 47.0 3.04e-01 100.0% 38.4%
5037379 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.55 47.0 3.46e-01 97.1% 91.5%
4415830 314.1.1.11 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.55 47.0 3.45e-01 97.1% 90.5%
3813872 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.55 48.0 3.17e-01 100.0% 91.3%
4948943 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 43.0 4.25e-01 90.0% 83.3%
4950139 243.1.1.25 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.54 45.0 3.82e-01 97.1% 84.0%
3238606 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 47.0 4.03e-01 100.0% 62.6%
5070380 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.54 42.0 2.86e-01 90.0% 34.8%
4930696 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.53 43.0 3.47e-01 92.9% 55.3%
3739406 330.1.1.9 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dcr1-like_dsRNA-bd_dom 0.53 41.0 3.65e-01 85.7% 57.1%
4652688 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.52 40.0 3.31e-01 82.9% 51.4%
5028422 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.52 41.0 2.86e-01 92.9% 81.4%
5072634 2484.1.1.59 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.51 45.0 3.00e-01 100.0% 70.5%
3663237 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 35.0 3.45e-01 74.3% 70.0%
D2 high residues 89-161
PDB
Domain cluster: rep: NC_070936.1__YP_010665660.1__PQB72_gp199__00199__D90-162
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 44.0 3.84e-01 97.3% 40.0%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.76 69.0 6.18e-01 100.0% 97.0%
6a9tA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.75 67.0 4.57e-01 100.0% 37.7%
2e62A01 6.10.140.420 Special › Helix non-globular › Helix Hairpins › 0.73 49.0 5.64e-01 76.7% 98.1%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.70 43.0 4.23e-01 97.3% 59.2%
4ysxC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.69 47.0 3.74e-01 71.2% 37.9%
3og5A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.67 56.0 5.39e-01 100.0% 80.0%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 49.0 4.52e-01 78.1% 60.4%
6qm7N00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 60.0 4.25e-01 100.0% 61.5%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.66 50.0 4.97e-01 100.0% 78.9%
2qdfA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 52.0 5.02e-01 100.0% 84.3%
5uayA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 50.0 4.84e-01 100.0% 78.3%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 51.0 5.05e-01 98.6% 88.3%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 50.0 4.89e-01 100.0% 84.1%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.58 48.0 4.70e-01 100.0% 84.6%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.58 50.0 4.28e-01 100.0% 91.8%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.57 46.0 4.40e-01 98.6% 75.0%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.48e-01 82.2% 47.0%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.57 49.0 3.32e-01 97.3% 91.4%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 48.0 4.71e-01 97.3% 94.9%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 49.0 3.10e-01 98.6% 31.2%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.54 44.0 4.24e-01 89.0% 94.0%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 43.0 2.98e-01 91.8% 82.9%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 41.0 2.83e-01 84.9% 32.1%
2ch0A01 1.10.10.1180 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAN1, winged-helix domain 0.53 42.0 3.88e-01 89.0% 67.3%
3ckjA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 36.0 2.42e-01 71.2% 35.0%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 39.0 2.85e-01 83.6% 92.7%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 4.20e-01 90.4% 96.9%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 3.71e-01 100.0% 92.1%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.48e-01 91.8% 66.7%
1tigA00 3.30.110.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Translation initiation factor 3 (IF-3), C-terminal domain 0.50 43.0 4.11e-01 100.0% 97.7%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3654648 103.9.1.0 ↗ alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain 0.81 52.0 5.33e-01 71.2% 68.6%
3512341 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 64.0 6.59e-01 90.4% 92.9%
3509156 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.77 63.0 6.45e-01 87.7% 94.3%
3877772 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.76 58.0 6.15e-01 89.0% 90.8%
3544646 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.76 62.0 6.30e-01 87.7% 94.3%
3992117 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.75 61.0 4.39e-01 86.3% 36.6%
4021559 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.75 60.0 6.29e-01 86.3% 93.8%
4000709 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.75 65.0 6.62e-01 93.2% 97.1%
3169816 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.75 67.0 4.51e-01 100.0% 35.9%
3873692 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.74 52.0 5.80e-01 82.2% 96.4%
4011010 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 62.0 4.91e-01 91.8% 95.3%
4988046 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 46.0 5.43e-01 86.3% 92.0%
4559316 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.74 56.0 5.69e-01 87.7% 82.9%
3227034 5069.1.3.65 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PF31020 0.73 58.0 5.01e-01 86.3% 64.3%
3846390 2008.1.1.84 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector 0.73 66.0 4.68e-01 100.0% 89.8%
3848681 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.73 57.0 5.97e-01 89.0% 92.3%
3922168 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.73 55.0 5.61e-01 89.0% 82.9%
3797632 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 53.0 5.62e-01 89.0% 87.7%
3211598 864.1.1.1 ↗ a+b two layers › DLC › DLC › DLC › Dynein_light 0.72 65.0 5.88e-01 100.0% 88.9%
4944879 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 47.0 4.53e-01 100.0% 57.6%
4096162 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.72 54.0 4.87e-01 80.8% 58.0%
3518933 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.72 55.0 5.81e-01 87.7% 90.8%
5004067 192.3.1.1 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N 0.72 44.0 4.18e-01 97.3% 52.9%
3533067 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.72 54.0 5.50e-01 89.0% 82.9%
3577300 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.70 56.0 5.56e-01 86.3% 96.0%
3798173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.80e-01 91.8% 95.7%
5074335 633.4.1.0 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.67 62.0 5.35e-01 100.0% 84.4%
3710804 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 58.0 4.41e-01 98.6% 71.1%
3594178 210.1.1.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits 0.67 60.0 4.29e-01 100.0% 62.3%
3098606 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.67 60.0 4.26e-01 100.0% 61.8%
3908397 5001.1.1.3 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.65 45.0 3.03e-01 71.2% 27.1%
5074091 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.65 56.0 4.40e-01 100.0% 61.8%
5067760 283.1.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.65 58.0 5.45e-01 100.0% 82.2%
5040084 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.61 54.0 4.60e-01 100.0% 65.8%
3406884 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 49.0 3.43e-01 90.4% 36.0%
4932448 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.59 43.0 4.12e-01 100.0% 64.4%
2883712 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.59 38.0 4.19e-01 87.7% 84.5%
6903 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.59 34.0 3.68e-01 82.2% 69.6%
3171702 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.59 52.0 3.39e-01 100.0% 33.5%
4995146 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.58 48.0 4.50e-01 91.8% 90.0%
3414682 219.1.1.17 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1_2 0.58 50.0 3.13e-01 98.6% 28.1%
9538 2004.1.1.227 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DNMK 0.58 50.0 3.54e-01 100.0% 47.3%
3512178 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.58 50.0 3.54e-01 100.0% 88.5%
2642882 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.57 35.0 3.90e-01 87.7% 81.8%
3898373 5001.1.1.3 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 0.57 44.0 2.97e-01 82.2% 50.2%
3375968 304.9.1.7 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS 0.56 44.0 3.42e-01 100.0% 36.8%
3239066 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.56 49.0 3.09e-01 98.6% 82.2%
3233779 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.56 48.0 3.59e-01 98.6% 46.7%
3547233 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.55 44.0 3.34e-01 90.4% 70.5%
4999183 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 3.78e-01 79.5% 65.3%
3764706 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.55 44.0 3.18e-01 93.2% 75.2%
3519344 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.55 47.0 3.06e-01 95.9% 76.1%
4928889 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.55 44.0 2.76e-01 95.9% 94.7%
1907487 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.54 31.0 3.68e-01 83.6% 83.3%
4937824 328.8.1.1 ↗ a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.54 48.0 3.85e-01 100.0% 69.0%
3567156 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.54 43.0 3.14e-01 91.8% 70.2%
5050501 3715.1.1.1 ↗ a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.54 46.0 4.32e-01 100.0% 82.1%
3501234 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 45.0 2.92e-01 93.2% 78.8%
864441 223.3.1.1 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.54 37.0 3.98e-01 90.4% 89.7%
185814 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.53 42.0 4.06e-01 90.4% 76.5%
3859783 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 44.0 2.92e-01 93.2% 79.7%
3232477 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.52 40.0 3.65e-01 84.9% 67.0%
3197266 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.52 41.0 4.21e-01 90.4% 100.0%
3586214 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.50 41.0 2.90e-01 95.9% 92.4%
3273326 316.1.1.56 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF26128 0.50 41.0 2.94e-01 97.3% 43.8%