←Back to structures

MZ501268.1__QZA70825.1__AH06_42__00042

Bact-Vir

MZ501268.1__QZA70825.1__AH06_42__00042

Identity

Accession:
MZ501268 ↗
Kingdom:
phage

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_AH06

TaxID: 2869570

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-95
PDB
Domain cluster: rep: MN445183.1__QKE54409.1__ACSA002_0950__00095__D2-96
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 42.0 4.15e-01 100.0% 53.0%
1jz7A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 42.0 4.01e-01 100.0% 50.0%
3gqqA00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.72 48.0 3.90e-01 100.0% 38.3%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 40.0 3.76e-01 100.0% 49.6%
1zoqA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.65 59.0 4.63e-01 100.0% 89.0%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 41.0 3.98e-01 100.0% 55.6%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.62 32.0 4.11e-01 77.4% 88.2%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.61 47.0 3.40e-01 84.9% 80.9%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 3.92e-01 91.4% 65.6%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 37.0 3.89e-01 75.3% 70.6%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.57 41.0 3.30e-01 100.0% 39.2%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 36.0 3.90e-01 75.3% 75.9%
3mahA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 31.0 3.47e-01 72.0% 71.4%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 36.0 3.73e-01 75.3% 71.8%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 45.0 4.06e-01 91.4% 90.2%
1ci9A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 40.0 2.69e-01 78.5% 52.8%
5tgfD00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 39.0 2.68e-01 78.5% 41.6%
1j5uA01 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.52 42.0 3.90e-01 88.2% 89.7%
2e56A00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.94e-01 100.0% 88.2%
3b5iB01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 42.0 3.04e-01 89.2% 32.7%
3cu7A05 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 42.0 4.05e-01 91.4% 98.1%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 42.0 4.24e-01 88.2% 98.9%
6kjhA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 41.0 2.81e-01 90.3% 86.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3218243 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 44.0 4.62e-01 100.0% 76.5%
3358116 1075.4.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.60 45.0 3.17e-01 79.6% 92.5%
4032308 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.60 48.0 3.95e-01 86.0% 90.0%
3388736 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.60 42.0 3.63e-01 72.0% 85.0%
5020278 3012.1.1.19 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27313 0.59 37.0 3.51e-01 75.3% 51.3%
4475713 2003.1.5.55 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.57 40.0 3.15e-01 74.2% 67.6%
3739749 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.54 38.0 3.20e-01 74.2% 75.9%
3684103 109.4.1.1267 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.54 37.0 2.27e-01 71.0% 13.9%
3718926 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.53 46.0 3.25e-01 100.0% 85.4%
None — 0.53 36.0 2.84e-01 72.0% 32.0%
3599538 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 43.0 3.23e-01 92.5% 52.4%
4963515 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.52 41.0 2.90e-01 87.1% 81.3%
4930705 320.2.1.1 ↗ a+b two layers › R3H domain-like › Ribosomal protein S8, N-terminal domain › Ribosomal protein S8, N-terminal domain › Ribosomal_S8 0.51 33.0 3.88e-01 92.5% 95.4%