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MZ501268.1QZA70897.1AH06_122__00122

Bact-Vir

MZ501268.1__QZA70897.1__AH06_122__00122

Identity

Accession:: MZ501268 ↗
Kingdom:: phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Agricanvirus› Erwinia_phage_AH06

TaxID: 2869570

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 439-539

PDB

Domain cluster: rep: IMGVR_UViG_3300025288_001461-3300025288-Ga0210044_10000075107__D324-402

CATH (16)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1e94E03	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.94	90.0	8.87e-01	100.0%	97.2%
1um8A02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.92	76.0	7.79e-01	93.1%	89.7%
4ciuA04	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.79	64.0	6.71e-01	93.1%	93.5%
1r6bX05	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.79	66.0	6.69e-01	93.1%	89.9%
1qzmA00	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.75	62.0	6.38e-01	99.0%	95.7%
3sykA02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.72	58.0	6.07e-01	99.0%	96.7%
3tjmA02	1.10.1470.20	Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2	0.69	38.0	4.08e-01	100.0%	61.1%
3te6A02	1.10.8.60	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.62	56.0	5.43e-01	100.0%	98.2%
3fj1A01	3.40.50.10490	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1	0.60	42.0	3.41e-01	73.3%	64.2%
1or7B01	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.59	43.0	4.48e-01	77.2%	86.2%
5eowA00	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.57	49.0	3.45e-01	97.0%	99.7%
2nr9A00	1.20.1540.10	Mainly Alpha › Up-down Bundle › Rhomboid-like fold › Rhomboid-like	0.57	50.0	4.15e-01	100.0%	93.8%
3nuwA02	3.30.420.310	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain	0.55	36.0	2.89e-01	91.1%	31.7%
3sngA00	1.10.575.10	Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease	0.53	44.0	3.33e-01	91.1%	88.8%
1sg7A00	1.10.1740.70	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB	0.53	37.0	4.14e-01	82.2%	100.0%
2lciA00	3.40.50.11230	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.50	36.0	3.32e-01	75.2%	90.3%

ECOD (37)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4558893	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.96	82.0	8.68e-01	93.1%	97.8%
3638255	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.95	79.0	7.27e-01	93.1%	69.6%
3487258	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.94	79.0	7.97e-01	93.1%	87.0%
4566551	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.94	91.0	8.62e-01	100.0%	93.0%
4579942	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.94	91.0	8.82e-01	100.0%	93.6%
3582881	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.94	78.0	8.10e-01	93.1%	91.6%
1303233	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.94	79.0	7.16e-01	94.1%	68.8%
None	—		0.94	80.0	5.24e-01	94.1%	25.4%
4596842	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.94	90.0	8.39e-01	100.0%	85.8%
3212882	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.93	78.0	8.05e-01	93.1%	91.6%
4549893	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.93	89.0	8.54e-01	100.0%	91.2%
4094445	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.93	79.0	7.81e-01	94.1%	84.8%
4027606	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.92	88.0	8.34e-01	100.0%	87.0%
3075092	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.92	77.0	7.89e-01	93.1%	89.8%
3601921	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.92	89.0	8.58e-01	100.0%	93.6%
3344098	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.87	78.0	5.06e-01	97.0%	24.4%
3450454	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.87	79.0	6.93e-01	97.0%	68.6%
3967645	148.1.3.8 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small	0.77	64.0	6.59e-01	93.1%	93.7%
4013995	148.1.3.23 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6	0.74	57.0	6.11e-01	94.1%	96.5%
4940788	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.71	54.0	5.73e-01	79.2%	88.9%
4011290	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.71	54.0	5.81e-01	94.1%	95.3%
4680072	148.1.3.23 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_6	0.70	58.0	5.87e-01	100.0%	90.0%
4014858	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.69	57.0	5.55e-01	100.0%	83.6%
3249340	148.1.3.19 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3	0.68	48.0	5.42e-01	96.0%	100.0%
3557669	148.1.3.17 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid	0.68	48.0	4.61e-01	73.3%	66.1%
4209656	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.68	55.0	5.51e-01	100.0%	86.7%
4237904	148.1.3.17 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid	0.67	46.0	4.22e-01	76.2%	53.3%
3828121	148.1.3.211 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587	0.67	58.0	5.47e-01	97.0%	80.8%
3176699	148.1.3.27 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10	0.67	60.0	5.60e-01	100.0%	99.2%
4180021	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.66	56.0	5.63e-01	100.0%	94.0%
3669454	148.1.3.211 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF26587	0.63	55.0	5.52e-01	100.0%	95.2%
3830489	5081.1.1.1 ↗	alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid	0.58	51.0	4.21e-01	100.0%	59.5%
3627365	148.1.3.19 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3	0.55	49.0	4.76e-01	100.0%	90.0%
3968817	3831.1.1.1 ↗	alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI	0.55	42.0	4.56e-01	95.0%	97.6%
5030151	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.55	44.0	3.31e-01	89.1%	48.5%
5001605	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.53	40.0	3.25e-01	81.2%	81.5%
4030181	148.1.3.17 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid	0.53	46.0	3.96e-01	100.0%	67.6%

D2 medium residues 1-50

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1g41A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.89	80.0	5.16e-01	96.0%	24.9%
1um8A01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.89	80.0	5.02e-01	98.0%	28.3%
2lnzA00	1.10.286.70	Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › Get5 dimerization domain	0.72	52.0	5.61e-01	80.0%	97.5%
3g2bA00	1.10.10.1150	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD)	0.69	49.0	4.07e-01	76.0%	50.0%
2x43S00	6.10.140.1430	Special › Helix non-globular › Helix Hairpins ›	0.65	50.0	4.60e-01	86.0%	70.1%
1owfA00	4.10.520.10	Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins	0.63	44.0	3.69e-01	86.0%	39.6%
3fvvA02	1.20.1440.100	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function	0.60	41.0	3.62e-01	76.0%	48.0%
3ermB00	1.10.10.710	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like	0.58	52.0	4.80e-01	98.0%	84.4%
2v3sA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.58	45.0	3.78e-01	96.0%	46.9%
6whbA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.58	50.0	3.10e-01	96.0%	48.4%
3cwzB01	1.20.58.900	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain	0.57	51.0	3.67e-01	100.0%	42.5%
2yjgA01	3.90.226.30	Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain	0.53	37.0	2.58e-01	76.0%	54.1%

ECOD (22)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
None	—		0.91	70.0	5.25e-01	96.0%	36.6%
2724427	2004.1.1.441 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, AAA_2	0.89	77.0	5.74e-01	94.0%	40.9%
4643309	2004.1.1.702 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, MCM, AAA_2	0.89	81.0	4.75e-01	100.0%	14.6%
2034199	2004.1.1.154 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5	0.89	79.0	5.80e-01	96.0%	40.3%
2642909	2004.1.1.258 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2	0.89	79.0	5.33e-01	96.0%	29.4%
2034195	2004.1.1.153 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2	0.89	79.0	5.83e-01	96.0%	41.4%
4134121	2004.1.1.623 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, MCM, AAA_2, AAA_5	0.89	78.0	4.63e-01	96.0%	14.3%
3665498	2004.1.1.153 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2	0.88	79.0	4.74e-01	96.0%	22.4%
1931021	2004.1.1.153 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2	0.88	79.0	5.78e-01	96.0%	40.3%
None	—		0.88	80.0	4.78e-01	98.0%	18.0%
4377664	2004.1.1.545 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MCM, AAA_2, AAA_5	0.88	81.0	4.83e-01	100.0%	15.9%
4039355	2004.1.1.258 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA,AAA_2	0.88	77.0	4.56e-01	96.0%	13.7%
2642908	2004.1.1.154 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5	0.88	78.0	5.50e-01	96.0%	35.3%
4172408	2004.1.1.154 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_2,AAA_5	0.87	80.0	4.88e-01	100.0%	20.0%
4247371	2004.1.1.669 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_2	0.86	80.0	4.86e-01	100.0%	21.9%
4051403	2004.1.1.456 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N, AAA_2	0.86	80.0	4.87e-01	100.0%	19.6%
4090171	2004.1.1.424 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_2, AAA_5	0.86	79.0	4.86e-01	100.0%	19.3%
4568966	2004.1.1.456 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RuvB_N, AAA_2	0.86	79.0	4.91e-01	100.0%	20.4%
4076590	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.76	58.0	4.72e-01	82.0%	55.6%
5044812	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.76	55.0	3.54e-01	78.0%	18.2%
4959424	103.6.1.0 ↗	alpha arrays › RuvA-C › FGAM synthase PurL, linker domain › FGAM synthase PurL, linker domain	0.73	55.0	5.41e-01	82.0%	85.5%
5067688	101.1.2.70 ↗	alpha arrays › HTH › HTH › winged helix domain › PqqD	0.67	48.0	4.44e-01	80.0%	92.9%

D3 medium residues 51-116_332-356_413-437

PDB

Domain cluster: rep: JN638751.1__AEO93517.1__G_258__00250__D138-188_200-244

Pfam (4)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07724.21 best	AAA_2	37.8	2.90e-09	100.0%	51.8%
PF13401.13	AAA_22	28.8	1.90e-06	95.7%	70.0%
PF00004.36	AAA	45.5	1.40e-11	90.5%	58.8%
PF07728.21	AAA_5	35.9	9.80e-09	78.5%	56.1%

D4 medium residues 117-226_306-331

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2f3oA00	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.51	41.0	2.64e-01	87.5%	91.6%
3purA03	1.20.58.1360	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	30.0	3.25e-01	79.4%	70.0%

D5 medium residues 227-305

PDB

D6 medium residues 357-412

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3qv2A01	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.52	35.0	2.49e-01	71.4%	52.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3728856	171.1.1.9 ↗	alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3, Ribonucleas_3_3	0.55	37.0	2.53e-01	71.4%	35.6%