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MZ501271.1__QZA71260.1__AH02_15__00015

Bact-Vir

MZ501271.1__QZA71260.1__AH02_15__00015

Identity

Accession:
MZ501271 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 161-301
PDB
Domain cluster: representative
D2 high residues 315-467
PDB
D3 medium residues 9-50
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18454.8 best Mtd_N 34.6 2.00e-08 78.6% 89.2%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.99 94.0 8.68e-01 100.0% 82.4%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.76 60.0 5.98e-01 90.5% 90.7%
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.75 63.0 5.89e-01 100.0% 78.2%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.67 47.0 3.71e-01 76.2% 87.8%
1itxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 45.0 3.83e-01 76.2% 84.9%
1iizA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.63 43.0 3.14e-01 76.2% 25.0%
3x3mA01 3.30.2390.20 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › Type VII secretion system EccB, repeat 1 domain 0.62 42.0 3.44e-01 71.4% 98.8%
1y9lA00 2.40.128.230 Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM 0.62 42.0 3.16e-01 71.4% 54.5%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.00e-01 100.0% 22.1%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 48.0 3.00e-01 97.6% 91.1%
4dwsA01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.61 43.0 3.16e-01 78.6% 56.1%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 44.0 3.08e-01 73.8% 69.2%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 40.0 2.62e-01 71.4% 13.5%
2xwbF01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.60 37.0 3.21e-01 90.5% 36.8%
2mnjB00 2.60.40.4160 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 38.0 3.06e-01 71.4% 28.4%
2vseA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 44.0 3.13e-01 73.8% 70.2%
1xhhA00 2.60.40.1900 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain 0.59 40.0 3.20e-01 71.4% 75.8%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.59 45.0 3.69e-01 95.2% 53.7%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 44.0 4.41e-01 90.5% 88.1%
3zdrA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 40.0 2.64e-01 76.2% 54.4%
3jbtA05 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.59e-01 92.9% 13.0%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 40.0 3.48e-01 81.0% 81.4%
5dezA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 41.0 3.52e-01 88.1% 79.7%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 37.0 2.28e-01 73.8% 11.8%
3l2hA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 40.0 2.90e-01 92.9% 85.7%
1g4fA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 42.0 3.51e-01 97.6% 60.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1107990 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.99 94.0 8.76e-01 100.0% 84.0%
5002640 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.83 71.0 6.76e-01 97.6% 90.0%
2905173 3761.1.1.1 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Mtd_N 0.82 68.0 6.31e-01 95.2% 81.5%
3900165 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.77 65.0 6.52e-01 97.6% 97.7%
3917719 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.77 65.0 6.40e-01 100.0% 95.6%
3405960 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.76 61.0 6.11e-01 92.9% 93.0%
1505155 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.75 62.0 5.78e-01 100.0% 76.8%
3498702 3761.1.1.2 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.74 60.0 5.99e-01 97.6% 100.0%
4030628 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.74 64.0 3.60e-01 100.0% 8.4%
5069785 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.72 54.0 3.90e-01 83.3% 37.6%
3734604 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.70 47.0 4.22e-01 88.1% 48.3%
3906671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 49.0 5.01e-01 73.8% 92.5%
3528795 3761.1.1.0 beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.69 57.0 5.62e-01 100.0% 88.9%
3893051 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.67 47.0 4.95e-01 81.0% 91.4%
4955635 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.66 52.0 4.60e-01 88.1% 60.9%
1631501 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.66 45.0 2.75e-01 73.8% 10.4%
3233229 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 47.0 4.79e-01 83.3% 82.5%
3893040 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.66 49.0 4.81e-01 81.0% 84.4%
3391912 11.1.1.822 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.66 45.0 3.55e-01 71.4% 65.6%
3407018 391.1.2.11 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.66 49.0 4.45e-01 92.9% 58.3%
3532309 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.65 48.0 4.36e-01 90.5% 58.3%
3626411 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.65 45.0 4.16e-01 90.5% 54.5%
3755669 391.1.1.5 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › TILa 0.65 47.0 4.83e-01 85.7% 87.5%
3545467 391.1.2.10 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st 0.64 49.0 5.02e-01 97.6% 90.0%
3717073 217.1.1.2 a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 0.64 40.0 2.38e-01 73.8% 8.5%
3581861 376.1.4.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR 0.63 44.0 4.07e-01 88.1% 52.7%
3881979 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.61e-01 92.9% 92.7%
5071089 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 48.0 4.65e-01 88.1% 80.0%
4512216 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 51.0 4.92e-01 95.2% 84.0%
5069323 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 50.0 4.79e-01 92.9% 90.0%
3575826 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.62 46.0 4.46e-01 92.9% 72.0%
4983462 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 45.0 4.01e-01 83.3% 76.9%
4991056 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.61 48.0 4.55e-01 92.9% 76.4%
4927153 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.61 49.0 4.60e-01 92.9% 81.8%
5028514 375.1.1.63 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.60 47.0 4.32e-01 90.5% 75.0%
3625627 391.1.2.9 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.60 47.0 3.63e-01 92.9% 82.7%
3739111 2007.2.3.2 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc 0.60 45.0 2.97e-01 83.3% 23.3%
3335750 5.1.10.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › Clathrin_propel 0.60 46.0 3.81e-01 88.1% 60.0%
5019485 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.58 43.0 3.29e-01 85.7% 66.4%
3234524 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.56 38.0 2.52e-01 71.4% 58.9%
3493255 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 41.0 3.51e-01 81.0% 67.6%
3390232 384.1.1.0 few secondary structure elements › BPTI-like › BPTI-like › BPTI-like 0.56 41.0 4.00e-01 83.3% 68.0%
3605675 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 2.66e-01 100.0% 89.4%
3277094 376.1.6.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain 0.54 38.0 3.64e-01 90.5% 64.0%
4996195 304.39.1.6 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_2nd 0.53 37.0 3.45e-01 78.6% 71.7%
3766059 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.53 34.0 3.54e-01 100.0% 71.8%
5072475 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.53 37.0 2.21e-01 76.2% 32.0%
3495598 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.52 36.0 2.52e-01 73.8% 33.3%
5050281 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.50 38.0 3.10e-01 100.0% 43.8%
D4 medium residues 57-147
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bzcA05 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 45.0 4.48e-01 72.5% 83.3%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.78e-01 97.8% 96.7%
6tnyB02 2.40.50.430 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 4.10e-01 92.3% 92.9%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 42.0 3.01e-01 90.1% 69.7%
2wuhA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.50e-01 92.3% 76.1%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 4.40e-01 97.8% 98.9%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 4.24e-01 100.0% 93.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043741 2.1.1.21 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Methyltrn_RNA_3 0.64 45.0 4.85e-01 100.0% 88.0%
3514142 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 43.0 4.50e-01 70.3% 92.9%
3698598 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.63 44.0 4.57e-01 72.5% 94.1%
5043225 2.1.1.107 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP40_S1 0.63 44.0 4.56e-01 72.5% 90.6%
5043072 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 42.0 4.61e-01 97.8% 88.6%
3311698 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 43.0 4.70e-01 71.4% 94.6%
3615993 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 4.15e-01 70.3% 72.6%
5071024 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 49.0 4.48e-01 90.1% 92.8%
3736756 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.59 41.0 4.31e-01 71.4% 97.5%
3435395 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.58 44.0 3.44e-01 100.0% 36.1%
4408612 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.57 34.0 3.93e-01 82.4% 90.0%
3274867 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 46.0 3.34e-01 94.5% 67.0%
3854800 2.1.1.177 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1_RRP5 0.55 47.0 4.78e-01 98.9% 95.6%
4959594 3156.1.1.13 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.55 36.0 3.88e-01 95.6% 81.3%
4241480 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 43.0 3.33e-01 92.3% 61.9%
3501350 389.1.2.1 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.51 35.0 3.83e-01 94.5% 88.0%