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MZ501271.1__QZA71284.1__AH02_41__00041

Bact-Vir

MZ501271.1__QZA71284.1__AH02_41__00041

Identity

Accession:
MZ501271 ↗
Kingdom:
phage

Quality

72.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_AH02

TaxID: 2869573

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-70
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.71 57.0 4.45e-01 90.3% 88.6%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 4.25e-01 88.7% 73.1%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.60 40.0 3.00e-01 71.0% 27.2%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 50.0 4.06e-01 100.0% 73.6%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.59 45.0 3.00e-01 100.0% 21.2%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.58 45.0 4.00e-01 90.3% 67.7%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 41.0 3.57e-01 74.2% 95.7%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 48.0 4.17e-01 100.0% 79.8%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 47.0 3.96e-01 100.0% 76.4%
3bexA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 49.0 3.87e-01 100.0% 94.9%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.56 43.0 3.40e-01 87.1% 49.3%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 46.0 3.63e-01 100.0% 78.1%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 47.0 3.94e-01 100.0% 79.7%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 49.0 4.34e-01 100.0% 90.1%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.56 46.0 3.86e-01 95.2% 75.4%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 47.0 3.95e-01 95.2% 99.1%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.55 45.0 2.88e-01 95.2% 51.0%
4ckmB00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.55 47.0 3.65e-01 98.4% 66.0%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.55 34.0 3.15e-01 88.7% 48.7%
1mdbA02 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 38.0 2.86e-01 74.2% 37.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 33.0 3.31e-01 74.2% 56.1%
4rlqA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 2.80e-01 82.3% 71.8%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.54 46.0 3.66e-01 100.0% 64.9%
3ty4B00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 45.0 2.89e-01 100.0% 57.4%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 39.0 3.14e-01 82.3% 96.4%
3wuhB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.26e-01 100.0% 77.1%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 43.0 3.33e-01 100.0% 74.5%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 36.0 2.79e-01 75.8% 41.1%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.52 42.0 3.45e-01 90.3% 87.2%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 40.0 3.48e-01 100.0% 56.0%
3h1qA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 44.0 3.60e-01 96.8% 100.0%
3g3oA00 3.20.100.30 Alpha Beta › Alpha-Beta Barrel › mRNA Triphosphatase Cet1; Chain A › VTC, catalytic tunnel domain 0.51 35.0 2.39e-01 74.2% 26.3%
3bzbB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.79e-01 83.9% 86.5%
1cbfA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.50 42.0 3.41e-01 95.2% 95.0%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 2.68e-01 95.2% 43.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4948723 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.70 42.0 4.72e-01 100.0% 79.2%
4085772 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.70 42.0 3.99e-01 100.0% 50.7%
5078248 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.69 43.0 4.17e-01 100.0% 55.7%
3358438 109.4.1.363 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcf25 0.69 49.0 2.98e-01 75.8% 70.6%
4024730 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.65 47.0 4.25e-01 100.0% 56.5%
3928432 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.64 52.0 4.45e-01 90.3% 75.0%
3214705 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.64 53.0 4.43e-01 100.0% 67.5%
3623907 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 47.0 3.84e-01 93.5% 42.5%
3193266 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.62 49.0 3.68e-01 100.0% 36.6%
4949985 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 41.0 3.83e-01 100.0% 55.0%
4797890 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.61 45.0 4.14e-01 93.5% 60.0%
3515331 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.60 47.0 3.11e-01 90.3% 38.6%
3924597 330.16.1.0 ↗ a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain 0.60 49.0 4.72e-01 90.3% 92.9%
3619075 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.60 49.0 4.28e-01 100.0% 71.8%
3702712 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 46.0 3.20e-01 83.9% 51.2%
3574409 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.60 49.0 4.37e-01 91.9% 75.6%
3691567 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 49.0 4.08e-01 100.0% 78.2%
3839627 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 40.0 3.22e-01 72.6% 36.3%
4046244 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.59 50.0 4.17e-01 96.8% 91.8%
3598773 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 44.0 3.07e-01 83.9% 49.5%
2095479 1170.1.2.3 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL 0.58 44.0 3.89e-01 90.3% 63.9%
4944430 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.58 42.0 3.88e-01 77.4% 80.0%
5074582 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 4.51e-01 96.8% 100.0%
4388541 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.57 47.0 3.89e-01 95.2% 91.7%
4083094 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.56 47.0 3.92e-01 96.8% 93.0%
3758651 633.23.1.34 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.56 42.0 3.06e-01 83.9% 85.8%
3387236 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.55 42.0 2.86e-01 82.3% 66.7%
3242479 2484.1.1.190 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.55 47.0 3.05e-01 95.2% 36.8%
5064976 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 48.0 3.56e-01 98.4% 86.9%
3591893 2008.1.1.107 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD 0.55 44.0 3.22e-01 88.7% 46.7%
3720527 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.54 38.0 2.89e-01 75.8% 37.6%
5072332 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.54 42.0 2.83e-01 88.7% 31.5%
4096721 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.53 45.0 3.63e-01 95.2% 85.6%
5068175 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.53 45.0 3.54e-01 93.5% 97.7%
4933539 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.53 47.0 3.26e-01 100.0% 87.9%
4129233 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.53 46.0 3.73e-01 98.4% 68.3%
4945973 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.52 46.0 3.59e-01 98.4% 95.6%
3483223 109.21.1.3 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.52 40.0 2.48e-01 90.3% 38.7%
4934840 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 47.0 3.74e-01 100.0% 100.0%
5075524 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.52 45.0 3.21e-01 100.0% 90.8%
5078418 7584.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins 0.52 41.0 2.73e-01 88.7% 43.6%
3241726 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.51 40.0 2.62e-01 91.9% 84.9%
3789341 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 39.0 2.50e-01 85.5% 16.2%
3237267 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 3.61e-01 95.2% 81.0%
5004718 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 44.0 3.35e-01 100.0% 78.1%
4639619 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.50 44.0 3.39e-01 100.0% 84.8%