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MZ502379.1__QXV73174.1__X__00092

Bact-Vir

MZ502379.1__QXV73174.1__X__00092

Identity

Accession:
MZ502379 ↗
Kingdom:
phage

Quality

90.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Tequatrovirus› Escherichia_phage_vB_EcoM_Shinka

TaxID: 2859060

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-99
PDB
Domain cluster: rep: OR228459.1__WNV47609.1__X__00496__D181-252
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rc3A01 1.10.1740.140 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.77 59.0 5.19e-01 81.9% 79.6%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.71 54.0 4.88e-01 80.6% 83.3%
3sykA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.69 57.0 5.29e-01 91.7% 96.7%
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.63 47.0 3.43e-01 79.2% 48.7%
3nuqA01 1.10.150.450 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.63 41.0 3.72e-01 83.3% 48.5%
4fjvA02 1.20.1300.20 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Peptidase C65 Otubain, subdomain 2 0.63 42.0 3.36e-01 70.8% 34.7%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.62 47.0 3.86e-01 79.2% 56.8%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.61 50.0 3.62e-01 97.2% 78.8%
7dfeA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.61 46.0 3.90e-01 83.3% 51.2%
4bg5B00 1.10.3160.10 Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 0.61 51.0 3.82e-01 97.2% 71.4%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 41.0 4.36e-01 72.2% 83.6%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.60 43.0 4.26e-01 76.4% 85.5%
1fx0A03 1.20.150.20 Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain 0.59 49.0 4.18e-01 98.6% 72.1%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.31e-01 97.2% 98.2%
5vc7A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.56 43.0 4.18e-01 88.9% 100.0%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.56 40.0 3.55e-01 77.8% 81.1%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 40.0 3.67e-01 76.4% 61.5%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.55 38.0 3.04e-01 81.9% 34.4%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.54 40.0 3.53e-01 80.6% 66.4%
4i1mB01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 39.0 3.26e-01 80.6% 90.7%
3bxjA02 1.10.506.20 Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › 0.51 38.0 3.46e-01 77.8% 57.1%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.51 44.0 3.99e-01 97.2% 99.0%
2c61A00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 2.58e-01 91.7% 26.5%
1sr2A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 37.0 3.23e-01 80.6% 49.1%
1n5uA04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.50 43.0 4.14e-01 98.6% 97.7%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4946658 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.69 62.0 4.91e-01 100.0% 74.5%
3738033 148.1.3.15 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_assoc_2 0.68 59.0 5.63e-01 100.0% 83.5%
4013369 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 57.0 5.65e-01 100.0% 97.3%
4096686 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.64 45.0 4.32e-01 75.0% 76.5%
5062561 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.63 50.0 5.16e-01 95.8% 100.0%
3196270 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 42.0 3.66e-01 70.8% 77.4%
4955756 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.62 44.0 4.41e-01 75.0% 89.3%
3480896 148.1.3.42 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.62 51.0 5.36e-01 93.1% 100.0%
5028605 148.1.3.47 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DNAX_ATPase_lid 0.61 46.0 4.87e-01 94.4% 98.3%
4246144 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 50.0 4.89e-01 93.1% 87.5%
3009331 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.59 42.0 4.09e-01 76.4% 77.1%
4655075 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.59 41.0 3.88e-01 75.0% 66.7%
3499729 5073.1.1.11 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C 0.58 50.0 3.17e-01 100.0% 48.9%
4941193 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.58 41.0 3.90e-01 75.0% 70.6%
5080893 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 48.0 4.74e-01 98.6% 93.8%
3824153 611.7.1.11 ↗ alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › DUF7032 0.56 47.0 3.98e-01 97.2% 84.6%
4193124 148.1.3.373 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Ycf1 0.54 41.0 3.61e-01 81.9% 72.7%
3452618 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.54 47.0 3.27e-01 100.0% 30.0%
4360723 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.52 37.0 3.49e-01 76.4% 66.7%
3654442 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.51 42.0 4.18e-01 98.6% 100.0%