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MZ504995.1__QXV72142.1__Geezett_070__00070

Bact-Vir

MZ504995.1__QXV72142.1__Geezett_070__00070

Identity

Accession:
MZ504995 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lktA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.77 64.0 4.96e-01 94.6% 59.2%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.73 63.0 5.64e-01 100.0% 98.8%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 55.0 5.90e-01 85.7% 100.0%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 58.0 4.46e-01 100.0% 46.8%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 55.0 3.72e-01 100.0% 39.9%
3oqcA02 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 54.0 3.77e-01 100.0% 42.9%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.65 50.0 3.55e-01 85.7% 78.4%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 56.0 4.58e-01 96.4% 68.9%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.64 56.0 4.54e-01 100.0% 70.3%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.64 53.0 4.31e-01 100.0% 47.8%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.64 54.0 3.74e-01 100.0% 48.3%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 54.0 4.59e-01 96.4% 75.5%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 5.05e-01 91.1% 100.0%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.63 50.0 3.91e-01 91.1% 97.7%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 54.0 4.64e-01 98.2% 73.9%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.63 44.0 2.94e-01 76.8% 97.2%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.62 51.0 4.45e-01 94.6% 96.6%
1wb1A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 53.0 4.19e-01 96.4% 67.5%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 51.0 4.05e-01 100.0% 46.5%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 47.0 4.72e-01 94.6% 84.5%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 51.0 4.89e-01 98.2% 97.1%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.56e-01 98.2% 93.2%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.69e-01 100.0% 100.0%
1smpI00 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 3.95e-01 91.1% 95.0%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.59 47.0 3.79e-01 98.2% 81.2%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.59 48.0 4.06e-01 100.0% 70.6%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 44.0 3.47e-01 89.3% 76.6%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 43.0 3.42e-01 87.5% 74.1%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.57 42.0 3.97e-01 82.1% 100.0%
2b1xA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 43.0 3.53e-01 91.1% 88.1%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.56 48.0 4.00e-01 98.2% 91.2%
4lusB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.56 47.0 3.58e-01 100.0% 66.4%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 45.0 3.55e-01 100.0% 40.0%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.56 44.0 3.82e-01 89.3% 58.2%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.56 41.0 3.48e-01 85.7% 99.1%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 40.0 3.43e-01 89.3% 99.1%
7nz1G01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 44.0 3.81e-01 96.4% 100.0%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 39.0 3.28e-01 89.3% 87.4%
2iv2X04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.53 44.0 3.73e-01 98.2% 98.0%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.53 43.0 3.80e-01 100.0% 92.6%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 38.0 2.51e-01 78.6% 80.9%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.51 41.0 3.58e-01 92.9% 91.5%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.50 40.0 3.56e-01 92.9% 100.0%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 37.0 3.09e-01 83.9% 85.0%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.45e-01 87.5% 89.2%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971219 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.77 53.0 3.42e-01 82.1% 16.4%
3936469 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 64.0 5.52e-01 100.0% 63.3%
4064452 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.72 62.0 4.69e-01 100.0% 42.9%
2561577 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 56.0 5.51e-01 89.3% 80.3%
3989485 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.70 54.0 5.69e-01 85.7% 98.0%
4409482 3158.1.1.2 beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF2777 0.70 60.0 5.55e-01 100.0% 88.0%
3972956 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 59.0 4.48e-01 100.0% 42.1%
3300074 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 55.0 5.61e-01 87.5% 94.4%
3981575 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.07e-01 80.4% 90.9%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.42e-01 91.1% 96.4%
5063537 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 53.0 5.22e-01 92.9% 90.0%
2034120 5.1.3.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CyRPA 0.66 46.0 2.92e-01 75.0% 33.6%
3824699 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.66 54.0 5.17e-01 91.1% 90.8%
1688248 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.66 55.0 4.95e-01 96.4% 67.1%
4031578 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.32e-01 94.6% 98.0%
3945057 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.66 52.0 4.07e-01 89.3% 40.8%
1807495 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.52e-01 98.2% 100.0%
4361528 5.1.4.668 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CGLA 0.65 50.0 3.03e-01 85.7% 88.6%
3917565 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.65 54.0 4.09e-01 100.0% 58.7%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.64 53.0 4.66e-01 92.9% 62.4%
3709896 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.83e-01 100.0% 90.6%
4932427 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 55.0 4.72e-01 96.4% 75.6%
4949848 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.64 51.0 5.18e-01 100.0% 90.9%
3259547 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.46e-01 100.0% 80.0%
5017735 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.64 54.0 4.39e-01 96.4% 70.0%
161224 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.64 55.0 4.58e-01 98.2% 68.0%
3698630 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 55.0 4.51e-01 98.2% 71.4%
3602123 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 54.0 4.89e-01 96.4% 75.6%
3502084 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.70e-01 92.9% 94.3%
4952455 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 55.0 4.72e-01 98.2% 76.4%
4668791 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 55.0 4.48e-01 98.2% 61.0%
4945827 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 54.0 4.69e-01 98.2% 75.6%
5016556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.52e-01 96.4% 93.3%
5001586 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 53.0 4.66e-01 100.0% 90.0%
3599398 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.63 55.0 4.54e-01 98.2% 70.0%
5035934 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 49.0 4.76e-01 91.1% 90.8%
5001596 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 54.0 4.65e-01 98.2% 76.7%
5069810 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 54.0 4.85e-01 98.2% 75.0%
4944212 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 53.0 4.61e-01 96.4% 75.0%
3187986 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 53.0 4.38e-01 98.2% 65.7%
5036592 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.62 50.0 4.70e-01 96.4% 88.0%
1171020 1.1.8.4 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.62 53.0 4.50e-01 98.2% 71.9%
5036647 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 49.0 4.70e-01 94.6% 87.1%
146935 3158.1.1.1 beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.62 52.0 4.97e-01 100.0% 97.1%
3754343 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.62 51.0 4.79e-01 100.0% 85.3%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 5.16e-01 100.0% 92.3%
3931055 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.61 52.0 4.76e-01 98.2% 96.0%
4125814 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 52.0 4.80e-01 100.0% 89.3%
4964421 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 48.0 4.69e-01 94.6% 90.8%
4952854 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.59 47.0 4.58e-01 94.6% 90.8%
3890165 219.1.1.24 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N 0.59 49.0 3.42e-01 100.0% 49.8%
5067107 1.1.2.4 beta barrels › cradle loop barrel › RIFT-related › double psi › Molydop_binding 0.58 50.0 4.44e-01 100.0% 96.5%
4032535 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.58 47.0 3.57e-01 100.0% 66.7%
3417047 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.58 50.0 4.77e-01 98.2% 93.8%
5036377 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 48.0 3.80e-01 100.0% 88.8%
1606334 4.10.1.0 beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain 0.56 41.0 3.88e-01 82.1% 97.2%
3300848 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.56 42.0 3.55e-01 100.0% 45.6%
3278614 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.54 44.0 3.41e-01 94.6% 78.6%
3970659 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 39.0 3.88e-01 76.8% 100.0%
3213275 5.1.4.158 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.54 42.0 2.62e-01 92.9% 84.6%
2394538 2.1.1.101 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › KfrB 0.53 36.0 2.89e-01 82.1% 34.8%
3974596 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 39.0 3.96e-01 85.7% 92.7%
3784883 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.52e-01 87.5% 20.9%
5039027 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 37.0 3.09e-01 83.9% 87.5%
3389866 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.54e-01 96.4% 77.2%
3644718 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.51 42.0 3.93e-01 96.4% 75.7%
4933391 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 37.0 3.44e-01 83.9% 95.0%