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MZ516527.1__QXN68737.1__X__00015

Bact-Vir

MZ516527.1__QXN68737.1__X__00015

Identity

Accession:
MZ516527 ↗
Kingdom:
phage

Quality

55.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hafnia_phage_yong2

TaxID: 2859519

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-95
PDB
D2 medium residues 142-281
PDB
Domain cluster: rep: MG592484.1__AUR88223.1__NVP1111A_29__00029__D270-393
D3 medium residues 369-467
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o82A00 1.20.225.10 Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 0.62 40.0 4.57e-01 94.9% 92.9%
3cymA03 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.58 33.0 3.52e-01 84.8% 62.5%
1sxjB03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.57 44.0 4.55e-01 87.9% 87.0%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.57 40.0 4.18e-01 74.7% 82.4%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.54 33.0 3.24e-01 72.7% 53.6%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.53 30.0 3.34e-01 77.8% 67.9%
3vprA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 43.0 3.82e-01 88.9% 77.2%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.51 39.0 3.66e-01 80.8% 83.5%
2imiB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 35.0 3.24e-01 74.7% 98.6%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 39.0 3.51e-01 86.9% 74.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3766089 633.7.1.4 ↗ alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like › PIEZO 0.62 43.0 3.69e-01 70.7% 60.0%
4973408 3486.1.1.0 ↗ alpha bundles › Integron gene cassette protein HFX_CASS2-like › Integron gene cassette protein HFX_CASS2 › Integron gene cassette protein HFX_CASS2 0.56 43.0 4.29e-01 84.8% 85.7%
3248745 627.1.1.1 ↗ alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 0.54 32.0 2.85e-01 71.7% 37.9%
3932321 109.46.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.52 38.0 3.57e-01 82.8% 61.6%
3965562 601.33.1.22 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › HemX 0.51 37.0 3.82e-01 93.9% 78.9%
3430550 604.16.1.3 ↗ alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain › Vwaint 0.50 42.0 4.17e-01 91.9% 99.0%