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MZ516527.1__QXN68748.1__X__00026
Bact-VirMZ516527.1__QXN68748.1__X__00026
Identity
- Accession:
- MZ516527 ↗
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 54-278
Domain cluster:
rep: LD_Run2_08_scaffold_35_prodigal-single.1__X__X__00177__D121-323
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00154.28 best | RecA_N | 421.0 | 2.70e-126 | 100.0% | 85.9% |
| PF08423.18 | Rad51 | 38.5 | 1.10e-09 | 94.7% | 83.6% |
| PF27531.1 | MT3502_N | 28.1 | 2.80e-06 | 48.0% | 75.6% |
D2
high
residues 285-343
Domain cluster:
rep: KX925554.1__APC46342.1__X__00080__D281-342
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21096.3 best | RecA_C | 82.0 | 3.60e-23 | 96.6% | 96.5% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jrjA02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.97 | 92.0 | 9.29e-01 | 100.0% | 100.0% |
| 1xp8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.97 | 92.0 | 9.18e-01 | 100.0% | 98.3% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.94 | 89.0 | 8.08e-01 | 100.0% | 86.7% |
| 3fnrA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.61 | 50.0 | 3.24e-01 | 96.6% | 29.6% |
| 7rh9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 46.0 | 3.41e-01 | 84.7% | 84.0% |
| 1f32A02 | 3.30.1120.50 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 | 0.58 | 35.0 | 3.52e-01 | 100.0% | 58.3% |
| 1f32A01 | 3.30.1120.50 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 | 0.55 | 37.0 | 3.64e-01 | 96.6% | 64.2% |
| 5o7oC01 | 3.30.310.280 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.54 | 44.0 | 3.63e-01 | 100.0% | 75.2% |
| 2wyoC01 | 3.30.1490.250 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.53 | 44.0 | 3.74e-01 | 98.3% | 69.2% |
| 4l0fA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.51 | 46.0 | 2.73e-01 | 100.0% | 22.0% |
| 1hp1A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 43.0 | 2.77e-01 | 100.0% | 93.3% |
| 2k54A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.11e-01 | 98.3% | 40.7% |
| 1zpdA02 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.51 | 42.0 | 3.19e-01 | 100.0% | 73.0% |
| 1f7uA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 41.0 | 2.60e-01 | 96.6% | 18.4% |
| 8d3mA02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.50 | 42.0 | 2.90e-01 | 100.0% | 27.9% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.22e-01 | 83.1% | 82.2% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4452602 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 1.00 | 97.0 | 5.71e-01 | 100.0% | 17.1% |
| 4258207 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.99 | 89.0 | 9.25e-01 | 93.2% | 100.0% |
| 4504505 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.99 | 93.0 | 9.27e-01 | 98.3% | 96.7% |
| 3962196 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.98 | 94.0 | 8.76e-01 | 100.0% | 85.7% |
| 4680941 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.98 | 94.0 | 8.36e-01 | 100.0% | 76.9% |
| 4339052 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.98 | 94.0 | 8.26e-01 | 100.0% | 73.8% |
| 4524142 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.98 | 93.0 | 8.03e-01 | 100.0% | 69.4% |
| 4144386 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.98 | 92.0 | 8.55e-01 | 98.3% | 82.9% |
| 3454856 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.98 | 90.0 | 8.16e-01 | 96.6% | 77.3% |
| 4163672 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.97 | 92.0 | 8.60e-01 | 100.0% | 84.3% |
| 4098746 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.97 | 92.0 | 8.12e-01 | 100.0% | 75.0% |
| 4345267 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.96 | 91.0 | 8.07e-01 | 100.0% | 73.8% |
| 4650117 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.95 | 90.0 | 7.95e-01 | 100.0% | 81.2% |
| 4568160 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.95 | 87.0 | 8.41e-01 | 96.6% | 89.1% |
| 4508262 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.94 | 87.0 | 8.72e-01 | 98.3% | 96.7% |
| 3438302 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.93 | 82.0 | 8.55e-01 | 94.9% | 100.0% |
| 3350669 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.93 | 86.0 | 8.05e-01 | 100.0% | 82.9% |
| 3644530 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.93 | 85.0 | 8.50e-01 | 100.0% | 96.7% |
| 3421663 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.92 | 84.0 | 7.90e-01 | 100.0% | 82.9% |
| 4250277 | 502.1.1.1 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C | 0.92 | 85.0 | 7.99e-01 | 100.0% | 84.3% |
| 3354127 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.91 | 83.0 | 8.26e-01 | 100.0% | 96.7% |
| 3703518 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.74 | 65.0 | 4.90e-01 | 96.6% | 89.6% |
| 4192177 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.67 | 55.0 | 3.36e-01 | 94.9% | 24.7% |
| 4324089 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.65 | 52.0 | 3.01e-01 | 89.8% | 15.7% |
| 4325434 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.63 | 52.0 | 3.06e-01 | 96.6% | 15.9% |
| 4575225 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 51.0 | 4.20e-01 | 100.0% | 97.3% |
| 5053551 | 3241.1.1.1 ↗ | alpha arrays › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › Golgi phosphoprotein 3 › GPP34 | 0.57 | 44.0 | 3.09e-01 | 86.4% | 32.9% |
| None | — | 0.54 | 34.0 | 3.08e-01 | 76.3% | 44.7% | |
| 5055179 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.54 | 38.0 | 2.67e-01 | 76.3% | 23.8% |
| 3693158 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.52 | 41.0 | 2.78e-01 | 86.4% | 72.2% |
| 3729353 | 101.1.1.334 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PheRS_DBD3, PheRS_DBD2 | 0.52 | 39.0 | 3.27e-01 | 83.1% | 95.2% |