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MZ516527.1__QXN68766.1__X__00044

Bact-Vir

MZ516527.1__QXN68766.1__X__00044

Identity

Accession:
MZ516527 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hafnia_phage_yong2

TaxID: 2859519

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-107
PDB
Domain cluster: rep: IMGVR_UViG_3300021493_000001-3300021493-Ga0190306_1000018121__D17-108
D2 high residues 183-279
PDB
Domain cluster: rep: MN689509.1__QGT52595.1__CHPC1175_000249__00031__D298-376
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09524.16 best Phg_2220_C 65.6 4.90e-18 75.3% 98.6%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6dkuA01 1.10.8.950 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Filoviridae VP35, C-terminal inhibitory domain, helical subdomain 0.63 43.0 4.77e-01 77.3% 93.2%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.60 27.0 3.52e-01 73.2% 74.0%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.58 30.0 2.73e-01 81.4% 37.6%
4p9fA02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.54 38.0 3.45e-01 76.3% 61.1%
3cwzB01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.52 38.0 3.39e-01 93.8% 52.1%
4i0xH00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 29.0 3.29e-01 78.4% 71.1%
4mo7A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 38.0 3.36e-01 77.3% 75.4%
8sbeA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.51 37.0 3.07e-01 76.3% 92.0%
3bvxA02 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.51 36.0 3.51e-01 74.2% 86.5%
1gzmA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 43.0 3.12e-01 100.0% 55.2%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.51 32.0 3.40e-01 100.0% 74.1%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4030825 148.1.3.59 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Phg_2220_C 0.94 75.0 8.27e-01 87.6% 100.0%
4179239 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 64.0 6.21e-01 87.6% 85.7%
3570651 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 29.0 3.02e-01 78.4% 48.4%
3317710 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.52 40.0 3.50e-01 82.5% 98.7%
3436779 611.2.1.2 ↗ alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) › Rx_N 0.52 39.0 3.45e-01 79.4% 91.7%
3654565 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.52 38.0 3.43e-01 78.4% 88.3%
5050541 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.51 40.0 3.06e-01 83.5% 85.8%
4962746 5069.1.1.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.51 30.0 3.05e-01 96.9% 56.0%