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MZ520832.1__QYC52633.1__X__00203

Bact-Vir

MZ520832.1__QYC52633.1__X__00203

Identity

Accession:
MZ520832 ↗
Kingdom:
phage

Quality

72.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_SSBI34

TaxID: 2861009

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-123
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.74 57.0 4.90e-01 81.6% 98.0%
3fyfA00 2.40.128.410 Mainly Beta › Beta Barrel › Lipocalin › 0.72 54.0 4.75e-01 80.6% 77.2%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.71 54.0 5.30e-01 79.6% 91.5%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.71 53.0 4.96e-01 79.6% 87.7%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 51.0 4.67e-01 78.6% 97.7%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 50.0 4.46e-01 79.6% 95.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 50.0 4.49e-01 79.6% 97.0%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 49.0 4.52e-01 78.6% 99.2%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 48.0 4.16e-01 79.6% 70.0%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 49.0 4.40e-01 79.6% 97.0%
2xstA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 47.0 4.14e-01 79.6% 71.8%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.63 47.0 4.72e-01 78.6% 96.0%
1lf7A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 47.0 3.96e-01 79.6% 62.8%
3esiA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 47.0 4.30e-01 100.0% 62.1%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.62 44.0 4.61e-01 74.5% 89.8%
1vprA03 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 46.0 3.97e-01 79.6% 94.9%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 47.0 4.48e-01 81.6% 99.1%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.61 36.0 4.40e-01 77.6% 95.0%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 45.0 4.12e-01 77.6% 92.2%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.60 43.0 4.45e-01 75.5% 88.9%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.60 48.0 3.55e-01 86.7% 88.8%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 44.0 4.00e-01 78.6% 95.5%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 43.0 3.98e-01 78.6% 97.7%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 44.0 4.04e-01 79.6% 75.8%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 47.0 3.45e-01 86.7% 89.2%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.56 38.0 4.00e-01 70.4% 77.8%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 48.0 3.37e-01 96.9% 85.4%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 45.0 3.03e-01 87.8% 78.3%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 44.0 3.35e-01 85.7% 71.7%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.55 42.0 3.79e-01 82.7% 77.9%
5a67A00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 38.0 2.98e-01 72.4% 86.9%
3rjuA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 47.0 3.23e-01 95.9% 83.8%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.54 43.0 3.49e-01 85.7% 88.3%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 40.0 3.67e-01 79.6% 77.3%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 46.0 3.54e-01 98.0% 81.1%
3blcA00 2.70.98.90 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 45.0 3.24e-01 91.8% 87.1%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.65e-01 83.7% 66.4%
6gh3A01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 42.0 2.99e-01 88.8% 84.0%
1k38A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 46.0 3.44e-01 99.0% 87.9%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.51 44.0 3.82e-01 98.0% 78.0%
2xepB02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 44.0 3.28e-01 96.9% 84.4%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 42.0 3.20e-01 98.0% 86.8%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.50 44.0 3.79e-01 98.0% 73.2%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3972703 9.1.1.17 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF 0.74 57.0 5.64e-01 80.6% 90.5%
3250134 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.72 54.0 5.05e-01 79.6% 88.3%
857 9.3.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.71 54.0 5.22e-01 79.6% 93.5%
4419937 77.1.1.0 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.71 42.0 4.47e-01 84.7% 68.2%
2581425 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.70 39.0 5.08e-01 88.8% 98.2%
2320506 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 51.0 4.46e-01 77.6% 93.8%
4879580 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.68 48.0 4.17e-01 73.5% 87.6%
3487462 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.68 50.0 4.50e-01 76.5% 97.7%
4668044 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.68 50.0 4.55e-01 78.6% 97.7%
4614038 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.67 50.0 4.51e-01 78.6% 97.0%
3702318 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.67 51.0 3.94e-01 82.7% 80.0%
1489037 3335.1.1.1 ↗ beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › TbpB_C 0.66 47.0 5.02e-01 75.5% 96.5%
3988102 222.1.1.16 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl-ACP_TE_C 0.66 45.0 4.55e-01 100.0% 70.0%
4046583 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.66 48.0 4.36e-01 76.5% 97.7%
5068508 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.65 46.0 3.06e-01 73.5% 88.3%
2103558 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.65 49.0 4.36e-01 79.6% 94.2%
4128674 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.63 52.0 4.02e-01 88.8% 95.3%
3230371 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.63 40.0 3.83e-01 94.9% 56.4%
1063623 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.63 47.0 4.19e-01 79.6% 97.8%
3236870 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 39.0 3.58e-01 91.8% 47.7%
4014909 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.62 51.0 3.98e-01 88.8% 96.2%
3727946 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.62 42.0 3.93e-01 99.0% 56.7%
4408461 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.62 47.0 3.90e-01 82.7% 92.3%
4195832 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.59 43.0 3.92e-01 76.5% 96.9%
820 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.59 43.0 3.98e-01 78.6% 97.7%
2027 12.3.1.17 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › RhgB_N 0.58 47.0 3.45e-01 86.7% 89.6%
818 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.58 43.0 3.95e-01 78.6% 97.7%
4348095 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.57 45.0 3.28e-01 84.7% 92.7%
3438388 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.57 45.0 4.05e-01 83.7% 86.7%
3412520 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 42.0 3.65e-01 79.6% 66.9%
4381862 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 49.0 3.56e-01 94.9% 91.9%
4094888 12.3.1.41 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Raffinose_syn 0.56 47.0 3.92e-01 95.9% 96.8%
4568601 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 45.0 3.16e-01 85.7% 84.0%
3891753 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.56 44.0 3.60e-01 86.7% 81.0%
4294460 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.56 46.0 3.25e-01 87.8% 87.4%
4055338 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.56 44.0 3.95e-01 100.0% 60.0%
5057652 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.56 45.0 3.32e-01 86.7% 91.2%
4048735 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.54 49.0 3.40e-01 100.0% 81.2%
4947620 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 44.0 3.39e-01 88.8% 93.6%
3501867 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.53 42.0 2.38e-01 83.7% 51.2%
4392904 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.53 45.0 3.24e-01 91.8% 89.3%
4012800 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 45.0 3.20e-01 91.8% 88.1%
4527800 1033.1.1.3 ↗ beta duplicates or obligate multimers › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › Toxin A (TcdA) delivery domain › TcdA_TcdB_pore, PF30720 0.53 44.0 2.53e-01 88.8% 48.1%
4058057 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.53 43.0 2.99e-01 87.8% 76.6%
4035911 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.53 45.0 3.30e-01 92.9% 87.7%
5013018 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.53 45.0 4.10e-01 99.0% 70.0%
4938639 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.72e-01 78.6% 98.2%
3929846 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 38.0 2.68e-01 75.5% 47.1%
5044414 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 44.0 3.28e-01 93.9% 90.2%
4382059 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 44.0 3.21e-01 94.9% 90.9%
4274955 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 44.0 3.20e-01 93.9% 88.4%
5071985 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.52e-01 90.8% 73.5%
4509362 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 44.0 3.13e-01 92.9% 79.0%
4302710 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 44.0 3.30e-01 94.9% 95.8%
4451360 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 43.0 3.25e-01 93.9% 91.2%
3953302 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.51 39.0 3.83e-01 79.6% 77.9%
4106356 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.51 37.0 3.49e-01 79.6% 95.4%
4113893 12.3.1.34 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › SOGP_N 0.51 44.0 3.25e-01 95.9% 90.6%
3675823 11.1.1.897 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_DEX1 0.51 36.0 3.08e-01 71.4% 78.1%
4285781 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 43.0 3.12e-01 94.9% 84.1%
3937294 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.50 37.0 3.10e-01 79.6% 76.1%