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MZ520832.1__QYC52640.1__X__00210

Bact-Vir

MZ520832.1__QYC52640.1__X__00210

Identity

Accession:
MZ520832 ↗
Kingdom:
phage

Quality

88.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_SSBI34

TaxID: 2861009

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-57_141-162
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c1yA03 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.59 43.0 4.67e-01 97.5% 98.4%
2xq0A03 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.59 40.0 3.29e-01 72.2% 72.6%
6bfnB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 45.0 3.43e-01 91.1% 51.5%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.55 42.0 3.66e-01 92.4% 52.8%
5xjnA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 46.0 2.99e-01 98.7% 64.3%
2dkwA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.53 46.0 3.92e-01 97.5% 78.6%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.51 41.0 3.44e-01 93.7% 71.6%
2lc3A00 1.10.720.80 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.51 32.0 3.14e-01 97.5% 56.8%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5032066 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.64 42.0 4.45e-01 96.2% 77.1%
5035601 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.62 41.0 4.49e-01 96.2% 88.3%
5047739 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.61 45.0 4.72e-01 89.9% 90.0%
3789792 164.1.1.0 ↗ alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.61 42.0 4.02e-01 73.4% 91.6%
4961987 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.59 47.0 4.46e-01 100.0% 73.7%
4486278 102.1.1.54 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DNA_ligase_ZBD 0.58 50.0 3.81e-01 100.0% 41.5%
4120292 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.56 42.0 4.21e-01 81.0% 97.5%
4939991 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.56 42.0 3.91e-01 81.0% 100.0%
4989597 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.55 40.0 3.89e-01 88.6% 67.8%
4299586 102.1.1.4 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc 0.55 43.0 4.36e-01 96.2% 86.3%
4052361 102.1.1.27 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 0.55 44.0 4.37e-01 100.0% 84.7%
4949641 1079.1.1.8 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.52 42.0 3.32e-01 93.7% 68.9%
D2 medium residues 58-140
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 47.0 4.28e-01 73.5% 69.0%
2b9rA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 47.0 3.96e-01 73.5% 53.6%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 46.0 4.28e-01 74.7% 71.7%
1vinA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 44.0 3.75e-01 73.5% 53.2%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 43.0 4.18e-01 73.5% 78.1%
4bbrM00 1.10.472.170 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.59 44.0 3.38e-01 80.7% 67.9%
1td6A03 1.10.472.40 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 0.58 41.0 4.02e-01 73.5% 70.7%
1wolA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.56 48.0 4.33e-01 100.0% 82.0%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 35.0 3.71e-01 71.1% 81.1%
2oebA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.51 42.0 3.51e-01 91.6% 65.1%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.50 39.0 3.53e-01 85.5% 98.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3494403 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.57 49.0 3.37e-01 100.0% 75.6%
4996581 101.1.2.750 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27374 0.56 45.0 4.10e-01 89.2% 83.5%
3269518 102.1.1.30 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_8 0.54 38.0 4.14e-01 74.7% 100.0%
4992089 5060.2.1.0 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain 0.51 41.0 3.79e-01 89.2% 89.1%
5065515 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 42.0 4.07e-01 95.2% 83.2%