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MZ547449.1__QXV72285.1__Acf1_00088__00088

Bact-Vir

MZ547449.1__QXV72285.1__Acf1_00088__00088

Identity

Accession:
MZ547449 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acidovorax_phage_ACF1

TaxID: 2856860

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 210-388
PDB
Domain cluster: rep: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015396__D229-404
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05204.20 best Hom_end 21.7 2.50e-04 46.9% 60.9%
PF14528.12 LAGLIDADG_3 27.2 5.00e-06 37.4% 65.8%
D2 high residues 774-1048
PDB
Domain cluster: rep: NC_048632.1__YP_009829961.1__HWA87_gp13__00013__D7-255
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20454.5 best GpA_nuclease 155.3 2.90e-45 89.1% 73.8%
D3 medium residues 32-48_437-490_518-544
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05876.19 best GpA_ATPase 45.7 9.40e-12 71.4% 24.0%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rifA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 62.0 4.89e-01 100.0% 93.2%
8alzB05 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 59.0 4.65e-01 99.0% 79.0%
5dcaA09 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 60.0 4.66e-01 100.0% 78.6%
1gm5A04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 55.0 4.32e-01 93.9% 75.4%
7ml0001 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 49.0 3.70e-01 82.7% 74.7%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 3.79e-01 82.7% 88.8%
5jajA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 54.0 3.88e-01 100.0% 52.1%
3fzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.74e-01 88.8% 84.7%
4wzzA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 44.0 3.74e-01 82.7% 60.4%
6k6wC01 3.40.50.10710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Metallo-hydrolase/oxidoreductase 0.56 45.0 3.96e-01 88.8% 91.3%
1b0zA01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 46.0 3.62e-01 100.0% 71.4%
2vl7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.97e-01 100.0% 78.4%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 44.0 3.29e-01 90.8% 42.4%
3zdrA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 3.37e-01 90.8% 81.9%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980011 2004.1.1.731 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GpA_ATPase, GpA_nuclease 0.94 90.0 5.95e-01 100.0% 47.9%
3981015 2004.1.1.731 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GpA_ATPase, GpA_nuclease 0.93 90.0 5.77e-01 100.0% 43.2%
3980729 2004.1.1.731 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GpA_ATPase, GpA_nuclease 0.89 85.0 5.82e-01 100.0% 55.9%
5069778 2004.1.1.186 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 0.70 54.0 4.22e-01 82.7% 64.2%
5006201 2004.1.1.220 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SWI2_SNF2 0.63 56.0 4.26e-01 96.9% 88.9%
4091592 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.63 58.0 3.54e-01 100.0% 27.9%
4002995 2004.1.1.522 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_19 0.63 57.0 3.59e-01 100.0% 71.8%
4013220 2004.1.1.23 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom 0.61 54.0 3.89e-01 100.0% 65.2%
4007160 2004.1.1.123 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_RecD 0.61 50.0 4.03e-01 88.8% 91.4%
3960998 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.58 52.0 4.72e-01 98.0% 99.2%
4600926 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 45.0 3.78e-01 88.8% 92.2%
3309616 2004.1.1.30 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.56 50.0 3.70e-01 100.0% 94.1%
3218897 7585.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.50 40.0 3.58e-01 86.7% 62.9%
3555012 7585.1.1.1 ↗ a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.50 40.0 3.60e-01 89.8% 89.0%
D4 medium residues 49-82_583-742
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF05876.19 best GpA_ATPase 49.8 5.40e-13 47.4% 28.9%
PF20454.5 GpA_nuclease 28.0 1.80e-06 24.7% 15.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981015 2004.1.1.731 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GpA_ATPase, GpA_nuclease 0.91 89.0 6.90e-01 100.0% 89.2%
3980011 2004.1.1.731 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GpA_ATPase, GpA_nuclease 0.83 81.0 6.49e-01 100.0% 92.5%
D5 medium residues 83-197_395-436
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00388__D99-198_300-332