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MZ561532.1__QXV72388.1__PSD9_103__00102
Bact-VirMZ561532.1__QXV72388.1__PSD9_103__00102
Identity
- Accession:
- MZ561532 ↗
- Kingdom:
- phage
Quality
78.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Straboviridae›
Dhakavirus›
Shigella_phage_PSD9
TaxID: 2861000
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-109
Domain cluster:
rep: qs_7_scaffold_0_curated_closed_complete_prodigal-single.1__X__X__00175__D11-114
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22945.3 best | LEM-3_GIY-YIG | 41.2 | 2.40e-10 | 90.1% | 53.0% |
D2
high
residues 341-496
Domain cluster:
rep: IMGVR_UViG_3300000255_000170-3300000255-LP_F_10_SI03_135DRAFT_10007621__D249-411
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kivA02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.58 | 22.0 | 3.32e-01 | 96.2% | 85.0% |
D3
medium
residues 114-257
Domain cluster:
rep: IMGVR_UViG_3300033153_012907-3300033153-Ga0366824_102808127__D27-122_188-212
D4
medium
residues 258-330
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ufbA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.76 | 69.0 | 4.42e-01 | 100.0% | 32.3% |
| 1g38A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.69 | 62.0 | 4.37e-01 | 100.0% | 34.1% |
| 3s1sA02 | 3.40.50.12420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 61.0 | 3.77e-01 | 100.0% | 25.1% |
| 1aj6A00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.55 | 47.0 | 3.48e-01 | 95.9% | 87.6% |
| 1o14A02 | 2.20.150.10 | Mainly Beta › Single Sheet › putative 5-dehydro-2- deoxygluconokinase like fold › putative 5-dehydro-2- deoxygluconokinase | 0.52 | 35.0 | 3.98e-01 | 71.2% | 94.3% |
| 2pb9A00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.50 | 40.0 | 3.18e-01 | 95.9% | 52.2% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4418049 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.77 | 70.0 | 4.40e-01 | 100.0% | 22.7% |
| 5076056 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.76 | 70.0 | 4.57e-01 | 100.0% | 31.9% |
| None | — | 0.76 | 70.0 | 4.49e-01 | 100.0% | 35.6% | |
| 4964246 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.76 | 69.0 | 4.50e-01 | 100.0% | 34.3% |
| None | — | 0.76 | 69.0 | 4.49e-01 | 100.0% | 34.9% | |
| 3987620 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.76 | 69.0 | 4.41e-01 | 100.0% | 33.8% |
| 4950207 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.76 | 69.0 | 4.38e-01 | 100.0% | 32.9% |
| 2322907 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.75 | 68.0 | 4.35e-01 | 100.0% | 35.5% |
| 4930428 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.75 | 69.0 | 4.51e-01 | 100.0% | 26.3% |
| 4971638 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.74 | 67.0 | 4.17e-01 | 100.0% | 24.2% |
| 3604450 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.74 | 67.0 | 4.73e-01 | 100.0% | 50.7% |
| 4944512 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.73 | 65.0 | 4.19e-01 | 100.0% | 21.5% |
| 5005190 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.73 | 66.0 | 4.20e-01 | 100.0% | 23.5% |
| 4936732 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.73 | 66.0 | 4.21e-01 | 100.0% | 30.3% |
| 5080533 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.72 | 64.0 | 4.13e-01 | 100.0% | 26.4% |
| 4948425 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.72 | 64.0 | 4.72e-01 | 97.3% | 50.8% |
| 4968431 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.69 | 62.0 | 4.25e-01 | 100.0% | 30.6% |
| 3957880 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.68 | 60.0 | 4.17e-01 | 100.0% | 32.7% |
| 185519 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.68 | 61.0 | 4.04e-01 | 100.0% | 35.7% |
| 3950008 | 2003.1.5.160 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase, Eco57I | 0.68 | 60.0 | 4.12e-01 | 100.0% | 32.5% |
| 4565957 | 2003.1.5.22 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase | 0.60 | 50.0 | 3.55e-01 | 100.0% | 33.2% |
| 4024861 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.60 | 53.0 | 3.59e-01 | 100.0% | 26.9% |
| 4624270 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.56 | 42.0 | 2.91e-01 | 80.8% | 42.4% |
| 3389878 | 11.16.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in A1 cistron-splicing factor AAR2 › N-terminal domain in A1 cistron-splicing factor AAR2 › AAR2_1st | 0.53 | 39.0 | 2.95e-01 | 79.5% | 53.8% |
| 3240740 | 11.16.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in A1 cistron-splicing factor AAR2 › N-terminal domain in A1 cistron-splicing factor AAR2 › AAR2_1st | 0.52 | 38.0 | 2.89e-01 | 79.5% | 48.2% |
| 3730273 | 301.7.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP | 0.51 | 43.0 | 3.66e-01 | 95.9% | 91.2% |
| 4222224 | 869.1.1.1 ↗ | a+b complex topology › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › Methenyltetrahydromethanopterin cyclohydrolase › MCH | 0.50 | 41.0 | 2.79e-01 | 97.3% | 64.6% |