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MZ568826.1__QYW06094.1__KASIA_p050__00050

Bact-Vir

MZ568826.1__QYW06094.1__KASIA_p050__00050

Identity

Accession:
MZ568826 ↗
Kingdom:
phage

Quality

80.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-61
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mydA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.70 61.0 4.56e-01 98.3% 87.5%
2qi2A03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.64 48.0 4.16e-01 82.8% 57.4%
3kosA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 51.0 4.37e-01 100.0% 95.1%
4zs9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 51.0 3.78e-01 100.0% 82.3%
4kd5A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.60 50.0 4.08e-01 100.0% 96.7%
2qsxA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 50.0 4.39e-01 100.0% 95.7%
3oxnA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 50.0 4.07e-01 98.3% 87.8%
5b7hB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 48.0 4.10e-01 100.0% 88.9%
5z50A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 49.0 3.90e-01 100.0% 77.9%
3up9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 48.0 3.81e-01 100.0% 82.6%
4n13A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 49.0 4.02e-01 100.0% 83.6%
1twyA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 48.0 4.00e-01 100.0% 86.1%
5crwA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 47.0 3.88e-01 100.0% 63.0%
3kn3B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 48.0 3.94e-01 100.0% 89.2%
3obyA03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.57 45.0 3.83e-01 87.9% 61.6%
1rrmA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.38e-01 100.0% 78.8%
1fuyB01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.37e-01 94.8% 36.6%
4ovjA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 44.0 3.36e-01 100.0% 82.3%
2k8sA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 47.0 4.32e-01 100.0% 83.7%
6g62A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 3.76e-01 98.3% 67.0%
7wgrA03 3.40.50.11610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain 0.55 46.0 3.66e-01 98.3% 84.7%
4lflA00 3.40.1400.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribose 5-phosphate Isomerase B; Chain: A, › Sugar-phosphate isomerase, RpiB/LacA/LacB 0.55 45.0 3.56e-01 100.0% 74.6%
3kgkB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 4.01e-01 100.0% 76.5%
3tmgB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 45.0 3.45e-01 100.0% 69.2%
4jwoA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 44.0 3.54e-01 100.0% 92.2%
1wz2A04 3.30.2320.20 Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › Class I aminoacyl-tRNA synthetases (RS) 0.55 39.0 3.52e-01 79.3% 62.5%
6i1cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.69e-01 100.0% 69.4%
3iv4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 42.0 3.57e-01 98.3% 67.9%
3nohA00 3.40.190.210 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.53 44.0 3.58e-01 100.0% 60.7%
4wedA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.53 44.0 3.08e-01 100.0% 55.3%
4ombA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 43.0 3.33e-01 100.0% 85.1%
2uzhA00 3.30.1330.50 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 0.52 37.0 2.87e-01 79.3% 35.9%
3quwA00 3.30.1330.40 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like 0.52 38.0 3.10e-01 82.8% 40.0%
1vhkA02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.51 37.0 2.82e-01 81.0% 98.8%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.51 39.0 3.21e-01 93.1% 83.7%
2xggB00 3.40.50.410 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain 0.51 41.0 3.25e-01 100.0% 94.6%
3og9A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 36.0 2.59e-01 79.3% 24.8%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.50 41.0 3.77e-01 100.0% 91.7%
6ckmA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.50 40.0 2.89e-01 100.0% 91.1%
3zxsA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 41.0 3.14e-01 100.0% 77.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4282818 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.65 53.0 4.16e-01 93.1% 43.1%
4201753 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.64 53.0 4.15e-01 93.1% 43.1%
3422465 2002.1.1.14 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glycolytic 0.62 46.0 3.13e-01 79.3% 78.6%
3788651 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.62 52.0 3.53e-01 100.0% 59.2%
4062289 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.62 46.0 4.02e-01 82.8% 62.4%
3724379 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.61 52.0 3.53e-01 100.0% 56.5%
4079005 298.4.1.6 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › T3SS_SCTL 0.61 53.0 4.18e-01 100.0% 46.4%
4991621 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 45.0 3.93e-01 82.8% 58.9%
4043932 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.60 44.0 3.80e-01 79.3% 56.8%
3571634 2008.1.1.89 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SCRE 0.60 53.0 3.86e-01 100.0% 48.8%
3943973 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.60 49.0 4.13e-01 98.3% 87.3%
3708638 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.59 49.0 4.07e-01 96.6% 70.8%
4936138 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.59 43.0 3.84e-01 77.6% 65.9%
3696011 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.59 50.0 3.31e-01 100.0% 54.8%
3607589 7522.1.1.3 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › OxoGdeHyase_C 0.59 50.0 3.95e-01 98.3% 85.4%
3987055 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.59 43.0 3.65e-01 79.3% 54.0%
3972997 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.59 49.0 3.45e-01 100.0% 93.3%
3942040 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.59 48.0 3.46e-01 100.0% 99.0%
4986274 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.58 47.0 3.74e-01 100.0% 66.4%
5054078 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.57 48.0 3.71e-01 100.0% 62.1%
4932884 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.57 45.0 3.83e-01 87.9% 61.0%
4957753 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.57 45.0 3.56e-01 100.0% 59.4%
3595935 7522.1.1.0 a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.56 47.0 3.75e-01 98.3% 84.6%
5028922 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 46.0 3.80e-01 100.0% 57.5%
4937714 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 47.0 3.50e-01 100.0% 60.0%
3948957 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.56 47.0 3.87e-01 100.0% 63.5%
4929663 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.56 48.0 3.53e-01 100.0% 53.3%
3495473 314.1.1.12 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat 0.56 43.0 3.17e-01 87.9% 61.8%
4945811 3008.1.1.0 a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.55 39.0 3.56e-01 79.3% 63.6%
5035596 298.4.1.1 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E 0.55 46.0 3.34e-01 100.0% 31.4%
3352386 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 46.0 2.99e-01 94.8% 77.1%
4011970 301.7.1.0 a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.55 41.0 3.26e-01 82.8% 40.8%
3295624 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.55 47.0 3.03e-01 98.3% 81.0%
3982265 298.4.1.0 a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E 0.55 44.0 3.87e-01 100.0% 57.9%
3432501 2485.1.1.3 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Glutaredoxin 0.55 46.0 3.95e-01 100.0% 71.0%
3643901 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 44.0 4.12e-01 98.3% 75.0%
1518874 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.53 46.0 3.76e-01 100.0% 93.7%
5044380 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.53 46.0 2.86e-01 100.0% 33.3%
4681637 4013.1.1.1 a/b three-layered sandwiches › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › a/b domain in QueA-like proteins (Pfam 02547) › Queuosine_synth 0.52 43.0 3.01e-01 100.0% 57.2%
1518769 7523.1.1.23 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › PBP_like_2 0.52 43.0 4.07e-01 100.0% 96.0%
5047030 7512.1.1.0 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.52 42.0 3.09e-01 100.0% 77.9%
1901477 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.52 42.0 3.66e-01 100.0% 97.1%
4043603 2007.1.1.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.52 42.0 3.75e-01 100.0% 84.2%
1547795 7523.1.1.17 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › OpuAC 0.51 43.0 3.93e-01 100.0% 95.2%
5042467 2007.1.5.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.51 41.0 3.61e-01 96.6% 90.8%
3282946 2007.1.5.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like 0.51 40.0 3.49e-01 96.6% 89.1%
4353919 2007.1.1.10 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase_3 0.51 43.0 2.98e-01 100.0% 81.3%
3655918 2003.1.10.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Ins134_P3_kin_N 0.51 42.0 3.83e-01 93.1% 95.0%
5048168 2007.1.5.2 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like › CCG 0.51 40.0 3.44e-01 96.6% 84.5%
1790872 7523.1.1.8 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_1 0.51 43.0 3.59e-01 100.0% 94.5%
5064820 301.2.1.1 a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › AIRS 0.51 37.0 2.90e-01 81.0% 37.2%
None 0.51 40.0 3.37e-01 100.0% 97.6%
4859639 2003.1.10.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Ins134_P3_kin_N 0.50 40.0 3.55e-01 93.1% 80.9%