←Back to structures

MZ568826.1__QYW06125.1__KASIA_p081__00081

Bact-Vir

MZ568826.1__QYW06125.1__KASIA_p081__00081

Identity

Accession:
MZ568826 ↗
Kingdom:
phage

Quality

69.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_phage_vB_SspS_KASIA

TaxID: 2866686

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 105-150
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pvlA03 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.64 49.0 3.65e-01 100.0% 33.1%
3pffA05 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.63 48.0 3.26e-01 84.8% 30.3%
2ld7A00 6.10.160.20 Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.62 50.0 4.11e-01 100.0% 44.7%
1khcA02 1.10.720.50 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain 0.59 49.0 4.39e-01 100.0% 85.5%
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.58 45.0 4.08e-01 89.1% 61.8%
5nl6B01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 43.0 3.29e-01 87.0% 80.2%
2bskE00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.58 34.0 3.10e-01 100.0% 42.9%
4zbwA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.57 43.0 3.73e-01 93.5% 56.3%
1egiA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.56 47.0 3.53e-01 100.0% 88.4%
3v76A03 1.10.8.260 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like 0.56 43.0 4.12e-01 100.0% 95.1%
2h56A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.56 42.0 3.16e-01 82.6% 94.7%
4i5sA01 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.55 40.0 3.73e-01 84.8% 67.7%
5y27A00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.55 44.0 3.48e-01 100.0% 41.8%
3id6A01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 43.0 3.48e-01 95.7% 53.8%
1huxA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 47.0 3.36e-01 100.0% 47.9%
2xtmA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 38.0 2.67e-01 100.0% 20.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4025109 130.1.1.6 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 0.77 61.0 5.30e-01 100.0% 57.1%
3970060 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.75 44.0 3.82e-01 95.7% 38.6%
3552760 130.1.1.6 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 0.75 59.0 6.26e-01 100.0% 100.0%
3930129 130.1.1.6 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PRP4 0.73 58.0 5.41e-01 100.0% 70.0%
3353640 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.70 61.0 5.37e-01 100.0% 80.0%
3937985 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.70 53.0 5.05e-01 82.6% 90.9%
3169158 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.70 57.0 4.64e-01 100.0% 47.8%
3269634 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.69 58.0 5.36e-01 97.8% 76.7%
3990045 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.66 41.0 3.61e-01 93.5% 41.4%
3782747 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.65 56.0 4.73e-01 100.0% 78.8%
3218541 109.7.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › Cytochrome c oxidase subunit E › Cytochrome c oxidase subunit E › RLL 0.62 52.0 4.31e-01 100.0% 97.8%
3939657 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 45.0 2.95e-01 89.1% 15.8%
3302030 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 41.0 3.80e-01 76.1% 56.7%
4969772 2007.1.11.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains 0.59 49.0 3.50e-01 95.7% 100.0%
1584477 102.2.1.6 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › HI0933_like_1st 0.58 45.0 4.07e-01 89.1% 94.0%
3849869 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.56 45.0 3.63e-01 100.0% 46.7%
3586994 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.55 43.0 4.06e-01 100.0% 87.7%
3514709 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.54 43.0 4.04e-01 87.0% 89.1%
3440716 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.54 47.0 3.43e-01 100.0% 40.0%
3932044 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.53 37.0 2.98e-01 73.9% 61.1%
3359983 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 45.0 3.48e-01 100.0% 47.3%
4983674 187.1.1.1 ↗ alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 0.52 46.0 3.14e-01 97.8% 40.6%
3046 102.2.1.6 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH › HI0933_like_1st 0.51 38.0 3.61e-01 97.8% 89.6%
D2 medium residues 1-96
PDB