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MZ568826.1__QYW06133.1__KASIA_p089__00089
Bact-VirMZ568826.1__QYW06133.1__KASIA_p089__00089
Identity
- Accession:
- MZ568826 ↗
- Kingdom:
- phage
Quality
68.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-69
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13392.13 best | HNH_3 | 32.8 | 5.60e-08 | 67.2% | 63.0% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.69 | 57.0 | 5.28e-01 | 89.6% | 86.7% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.66 | 58.0 | 4.42e-01 | 100.0% | 82.7% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.63 | 50.0 | 3.92e-01 | 86.6% | 63.4% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 45.0 | 4.24e-01 | 80.6% | 100.0% |
| 2l9wA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 40.0 | 3.50e-01 | 86.6% | 72.2% |
| 2wnyA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.52 | 38.0 | 3.09e-01 | 80.6% | 61.3% |
| 2oyrA01 | 3.40.1630.10 | Alpha Beta › 3-Layer(aba) Sandwich › S-adenosyl-L-methionine-dependent methyltransferases › YhiQ-like domain | 0.51 | 35.0 | 3.68e-01 | 82.1% | 87.3% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.51 | 45.0 | 3.15e-01 | 98.5% | 63.4% |
| 1jmuB01 | 3.90.1370.10 | Alpha Beta › Alpha-Beta Complex › Protein mu-1, chain B, domain 1 › Protein mu-1, chain B, domain 1 | 0.51 | 37.0 | 3.11e-01 | 79.1% | 94.2% |
| 3ripA02 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.50 | 40.0 | 2.78e-01 | 95.5% | 26.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 61.0 | 5.84e-01 | 83.6% | 85.3% |
| 3266965 | 378.1.2.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 | 0.76 | 57.0 | 5.79e-01 | 79.1% | 100.0% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 58.0 | 5.34e-01 | 89.6% | 65.9% |
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.73 | 67.0 | 5.50e-01 | 100.0% | 89.6% |
| 5053631 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.72 | 57.0 | 4.88e-01 | 86.6% | 91.8% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 59.0 | 5.16e-01 | 89.6% | 72.2% |
| 5080086 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 55.0 | 5.23e-01 | 88.1% | 87.5% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.68 | 48.0 | 4.69e-01 | 76.1% | 84.0% |
| 3952776 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.67 | 54.0 | 5.51e-01 | 86.6% | 98.5% |
| 3539740 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.67 | 59.0 | 4.80e-01 | 98.5% | 71.2% |
| 8233 | 378.1.1.6 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon | 0.66 | 58.0 | 4.42e-01 | 100.0% | 82.7% |
| 89916 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.66 | 58.0 | 4.42e-01 | 100.0% | 82.7% |
| 5082962 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.66 | 53.0 | 4.46e-01 | 86.6% | 58.2% |
| 5049537 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.65 | 54.0 | 4.79e-01 | 89.6% | 69.1% |
| 3386505 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.63 | 53.0 | 4.28e-01 | 97.0% | 60.7% |
| 3453254 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 42.0 | 4.73e-01 | 92.5% | 98.0% |
| 4025619 | 7566.1.1.2 ↗ | a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N | 0.60 | 39.0 | 2.75e-01 | 71.6% | 21.4% |
| 3998999 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.60 | 44.0 | 3.92e-01 | 80.6% | 83.0% |
| 3216383 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.58 | 43.0 | 3.84e-01 | 82.1% | 86.0% |
| 3174162 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 37.0 | 3.40e-01 | 82.1% | 52.6% |
| 3269797 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 41.0 | 4.28e-01 | 94.0% | 100.0% |
| 3668465 | 304.120.1.9 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › MBTP1_N | 0.51 | 34.0 | 3.28e-01 | 82.1% | 58.7% |
D2
medium
residues 247-289
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.78 | 57.0 | 5.25e-01 | 79.1% | 70.9% |
| 4edgA03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.72 | 53.0 | 4.81e-01 | 81.4% | 76.7% |
| 3hjlA03 | 1.20.5.2020 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.72 | 57.0 | 5.82e-01 | 93.0% | 100.0% |
| 4g2aA02 | 1.20.58.1690 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 57.0 | 4.55e-01 | 90.7% | 82.8% |
| 4qxbB00 | 6.10.280.250 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 53.0 | 4.58e-01 | 97.7% | 52.9% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.67 | 53.0 | 4.98e-01 | 93.0% | 100.0% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 44.0 | 4.13e-01 | 93.0% | 60.8% |
| 3oosA02 | 6.10.140.700 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 41.0 | 3.82e-01 | 100.0% | 55.4% |
| 4toiA02 | 1.10.287.610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 47.0 | 4.63e-01 | 95.3% | 85.4% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 40.0 | 3.50e-01 | 95.3% | 48.3% |
| 4o92A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 43.0 | 3.47e-01 | 100.0% | 91.4% |
| 2ckzA01 | 6.10.140.870 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 43.0 | 4.15e-01 | 86.0% | 91.7% |
| 2ofiA00 | 1.10.340.30 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 | 0.53 | 40.0 | 2.84e-01 | 97.7% | 38.8% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 39.0 | 3.76e-01 | 86.0% | 82.7% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 41.0 | 3.77e-01 | 97.7% | 93.7% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3238415 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.76 | 63.0 | 5.48e-01 | 97.7% | 61.4% |
| 3418997 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.76 | 51.0 | 5.23e-01 | 74.4% | 75.0% |
| 3215069 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.70 | 53.0 | 5.24e-01 | 90.7% | 80.0% |
| 3803427 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.68 | 50.0 | 5.23e-01 | 97.7% | 100.0% |
| 3954996 | 5081.1.1.3 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid_2 | 0.68 | 58.0 | 3.73e-01 | 97.7% | 27.5% |
| 3559882 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 52.0 | 2.89e-01 | 100.0% | 14.8% |
| 4459981 | 2007.6.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › Ribosomal_S2 | 0.60 | 49.0 | 3.13e-01 | 95.3% | 89.0% |
| 3802346 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.59 | 44.0 | 3.25e-01 | 86.0% | 51.9% |
| 3303017 | 109.1.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C | 0.59 | 39.0 | 3.17e-01 | 72.1% | 33.3% |
| 3331906 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.58 | 47.0 | 4.55e-01 | 95.3% | 82.0% |
| 3263557 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 42.0 | 3.11e-01 | 90.7% | 80.8% |
| 3675467 | 2485.1.1.13 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › GST_N | 0.52 | 42.0 | 2.87e-01 | 100.0% | 86.3% |
| 5050057 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.51 | 40.0 | 2.48e-01 | 97.7% | 54.6% |