←Back to structures

MZ568827.1__QYW06192.1__MuM161_p03__00003

Bact-Vir

MZ568827.1__QYW06192.1__MuM161_p03__00003

Identity

Accession:
MZ568827 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_phage_vB_SspS_MuM16-1

TaxID: 2866687

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-72
PDB
Domain cluster: rep: OM835952.1__UNI73696.1__KP12_285__00038__D3-61
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 57.0 5.62e-01 100.0% 79.4%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 56.0 5.32e-01 100.0% 73.6%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 56.0 4.74e-01 100.0% 52.4%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 51.0 5.11e-01 100.0% 81.7%
2xi8A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 52.0 5.14e-01 100.0% 80.3%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 54.0 5.01e-01 100.0% 71.1%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 57.0 5.17e-01 100.0% 72.0%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 50.0 4.92e-01 100.0% 80.0%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 54.0 5.31e-01 98.3% 86.4%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.64 52.0 3.72e-01 91.7% 36.6%
3nc3B00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.64 50.0 3.12e-01 90.0% 65.2%
7xi5A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.64 48.0 5.13e-01 100.0% 100.0%
3jw4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.71e-01 86.7% 66.4%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 43.0 4.29e-01 100.0% 81.5%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.17e-01 90.0% 72.0%
2wmmA01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.55 35.0 3.88e-01 83.3% 81.6%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.55 34.0 3.44e-01 86.7% 62.3%
2d8cA01 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.54 45.0 4.24e-01 96.7% 86.8%
4a64A01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.52 36.0 2.85e-01 73.3% 80.3%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.51 42.0 3.40e-01 96.7% 54.2%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 38.0 3.70e-01 85.0% 88.6%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.50 42.0 3.54e-01 100.0% 77.2%
5z4zC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.72e-01 93.3% 73.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943356 101.1.4.19 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_35 0.87 65.0 6.04e-01 100.0% 64.0%
3587532 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.80 65.0 6.72e-01 100.0% 96.4%
3964678 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 62.0 6.05e-01 96.7% 81.5%
4964308 101.1.4.94 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HVO_2718 0.75 62.0 6.05e-01 100.0% 83.1%
2087453 101.1.4.27 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › CYNS_N 0.73 57.0 5.49e-01 100.0% 74.3%
3983395 2484.1.1.136 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutL 0.70 62.0 3.85e-01 100.0% 18.2%
5028435 4040.1.1.1 ↗ alpha bundles › Fic-like › Fic-like › Fic-like › Fic 0.68 56.0 3.67e-01 91.7% 22.7%
3985846 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 55.0 4.87e-01 100.0% 63.3%
3590182 4979.1.1.0 ↗ alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › C-terminal domain of Hypothetical protein MPN330 › C-terminal domain of Hypothetical protein MPN330 0.63 55.0 4.96e-01 100.0% 72.9%
3289370 101.1.1.300 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 0.63 50.0 4.34e-01 91.7% 62.0%
3286340 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.62 50.0 4.41e-01 93.3% 63.4%
4483631 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.61 51.0 3.36e-01 98.3% 35.4%
3973850 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.61 50.0 4.33e-01 93.3% 60.0%
3280686 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.60 47.0 4.12e-01 91.7% 59.0%
4985358 131.1.1.10 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_3 0.59 49.0 3.71e-01 100.0% 71.2%
5016168 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.59 39.0 3.65e-01 100.0% 52.5%
3946248 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.59 47.0 4.06e-01 91.7% 60.0%
3982095 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.58 47.0 4.09e-01 93.3% 59.2%
3291647 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.58 48.0 4.27e-01 98.3% 65.3%
1893629 160.1.1.3 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C 0.58 39.0 3.62e-01 71.7% 53.2%
3280379 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.58 47.0 4.12e-01 96.7% 60.0%
3282047 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 48.0 4.18e-01 98.3% 74.0%
3944389 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 45.0 4.10e-01 91.7% 71.8%
3290021 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 47.0 4.04e-01 96.7% 67.6%
3289886 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.57 45.0 3.82e-01 91.7% 51.4%
4642479 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.55 44.0 3.89e-01 93.3% 70.5%
3262612 103.1.1.133 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF31077 0.54 37.0 3.99e-01 91.7% 84.0%
3865590 103.1.1.24 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › BIRC2-3-like_UBA 0.53 38.0 3.71e-01 98.3% 69.2%
4282037 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.53 40.0 3.65e-01 88.3% 81.1%
3448849 605.8.1.5 ↗ alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › Med26 0.53 34.0 3.36e-01 91.7% 60.0%
4988944 106.1.1.7 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Protoglobin 0.52 43.0 3.55e-01 100.0% 67.2%
3233442 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.52 36.0 3.65e-01 100.0% 75.0%
3407099 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.52 38.0 3.77e-01 80.0% 87.7%
4142399 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.52 41.0 3.66e-01 93.3% 60.0%
5045159 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.52 44.0 2.81e-01 100.0% 66.1%
4414382 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.51 42.0 3.85e-01 96.7% 80.0%
4115140 103.1.1.24 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › BIRC2-3-like_UBA 0.51 36.0 3.59e-01 83.3% 70.8%
5018554 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.50 43.0 3.71e-01 100.0% 84.0%
3586944 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.50 40.0 3.66e-01 96.7% 96.7%
3937985 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.50 37.0 3.85e-01 85.0% 87.3%
3987666 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.50 41.0 3.77e-01 96.7% 92.9%