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MZ568827.1__QYW06196.1__MuM161_p07__00007
Bact-VirMZ568827.1__QYW06196.1__MuM161_p07__00007
Identity
- Accession:
- MZ568827 ↗
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Taxonomy
TaxID: 2866687
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-55
Domain cluster:
rep: IMGVR_UViG_3300021467_000205-3300021467-Ga0190334_100023533__D2-53
D2
medium
residues 121-163
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2a2fX02 | 1.20.58.670 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D | 0.79 | 69.0 | 4.92e-01 | 100.0% | 38.0% |
| 7nc3F01 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.78 | 64.0 | 4.62e-01 | 88.4% | 36.0% |
| 4d7rA01 | 1.10.220.20 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › | 0.76 | 54.0 | 4.39e-01 | 76.7% | 40.2% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.74 | 56.0 | 5.25e-01 | 88.4% | 65.4% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.73 | 44.0 | 4.12e-01 | 79.1% | 48.1% |
| 1pgjA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.72 | 59.0 | 3.73e-01 | 100.0% | 59.3% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.72 | 61.0 | 5.13e-01 | 100.0% | 55.1% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.71 | 63.0 | 5.53e-01 | 100.0% | 69.8% |
| 3mtuE00 | 1.20.5.400 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.71 | 60.0 | 5.19e-01 | 95.3% | 65.2% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.69 | 59.0 | 4.82e-01 | 100.0% | 75.3% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.67 | 56.0 | 4.01e-01 | 100.0% | 93.6% |
| 7a0hA01 | 3.30.1140.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit | 0.67 | 53.0 | 4.01e-01 | 86.0% | 50.5% |
| 6ui4A02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 51.0 | 3.54e-01 | 86.0% | 25.2% |
| 2j49A00 | 1.25.40.500 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain | 0.64 | 51.0 | 3.75e-01 | 100.0% | 30.6% |
| 1z72A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.64 | 50.0 | 3.36e-01 | 100.0% | 19.9% |
| 1ywfA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.63 | 51.0 | 3.28e-01 | 100.0% | 19.9% |
| 1ufzA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 43.0 | 3.98e-01 | 79.1% | 55.2% |
| 2iexA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.60 | 48.0 | 4.66e-01 | 95.3% | 80.4% |
| 3vdpA01 | 1.10.8.420 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecR Domain 1 | 0.59 | 42.0 | 3.99e-01 | 74.4% | 80.8% |
| 5ywwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.59 | 46.0 | 3.49e-01 | 90.7% | 34.8% |
| 3waeA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 42.0 | 3.03e-01 | 90.7% | 33.3% |
| 3e21A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 37.0 | 3.82e-01 | 76.7% | 77.5% |
| 1zjcA01 | 3.40.1830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Thermophilic metalloprotease-like › Thermophilic metalloprotease (M29) | 0.51 | 44.0 | 3.02e-01 | 100.0% | 62.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3451236 | 397.4.1.3 ↗ | few secondary structure elements › Toxic hairpin › VhTI-like › VhTI-like › PF31266 | 0.89 | 72.0 | 7.16e-01 | 88.4% | 88.9% |
| 3570117 | 375.6.1.2 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 | 0.87 | 79.0 | 6.98e-01 | 100.0% | 73.3% |
| 4661396 | 212.1.1.22 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans | 0.85 | 67.0 | 4.11e-01 | 83.7% | 63.1% |
| 3798232 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.82 | 73.0 | 5.74e-01 | 100.0% | 50.0% |
| 4378665 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.82 | 71.0 | 5.67e-01 | 97.7% | 83.5% |
| 3792061 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.81 | 70.0 | 5.31e-01 | 100.0% | 45.6% |
| 4276514 | 3826.1.1.88 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › CC_BshC | 0.81 | 72.0 | 6.10e-01 | 100.0% | 61.4% |
| 4032446 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.81 | 72.0 | 5.90e-01 | 97.7% | 57.3% |
| 3218921 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.81 | 69.0 | 5.19e-01 | 100.0% | 43.1% |
| 4937556 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.80 | 70.0 | 6.30e-01 | 100.0% | 73.3% |
| 3617842 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.80 | 68.0 | 5.65e-01 | 100.0% | 58.7% |
| 4341419 | 4125.1.1.2 ↗ | alpha superhelices › BH3980-like › BH3980-like › BH3980-like › HAAS | 0.79 | 67.0 | 5.66e-01 | 93.0% | 61.4% |
| 3949864 | 632.1.1.37 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF6474 | 0.78 | 69.0 | 5.34e-01 | 97.7% | 84.4% |
| 5070824 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.76 | 64.0 | 4.39e-01 | 93.0% | 32.4% |
| 4259065 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.74 | 58.0 | 4.97e-01 | 93.0% | 54.7% |
| 3623019 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.73 | 65.0 | 5.45e-01 | 97.7% | 60.0% |
| 4887352 | 4246.1.1.4 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2, RNA_pol_Rpb1_1 | 0.72 | 58.0 | 3.43e-01 | 88.4% | 67.5% |
| 171404 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.72 | 61.0 | 5.13e-01 | 100.0% | 55.1% |
| 5021551 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.71 | 53.0 | 3.67e-01 | 86.0% | 23.1% |
| 4030521 | 604.12.1.2 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1 | 0.69 | 58.0 | 4.82e-01 | 93.0% | 54.7% |
| 3412985 | 101.1.11.104 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF3512 | 0.69 | 58.0 | 5.22e-01 | 97.7% | 68.3% |
| 2419127 | 316.1.1.11 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › GrpB | 0.67 | 54.0 | 3.56e-01 | 100.0% | 20.8% |
| 4083064 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.62 | 53.0 | 4.95e-01 | 97.7% | 83.0% |
| 3506294 | 3281.1.1.0 ↗ | alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related | 0.56 | 46.0 | 4.53e-01 | 93.0% | 91.1% |
| 3773454 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.56 | 45.0 | 4.29e-01 | 97.7% | 74.5% |