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MZ568827.1__QYW06207.1__MuM161_p18__00018
Bact-VirMZ568827.1__QYW06207.1__MuM161_p18__00018
Identity
- Accession:
- MZ568827 ↗
- Kingdom:
- phage
Quality
76.4
mean pLDDT
Taxonomy
TaxID: 2866687
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-90
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26867.1 best | Phage_Mu_gp18 | 90.6 | 7.00e-26 | 100.0% | 87.5% |
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4rxtA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.79 | 60.0 | 4.36e-01 | 80.6% | 34.8% |
| 4ry9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.68 | 54.0 | 3.96e-01 | 87.1% | 34.0% |
| 2looA02 | 1.10.10.1740 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like | 0.67 | 54.0 | 5.13e-01 | 91.9% | 98.7% |
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.65 | 53.0 | 4.01e-01 | 91.9% | 56.0% |
| 2oqmB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.65 | 50.0 | 3.58e-01 | 82.3% | 49.1% |
| 3b34A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.64 | 52.0 | 3.90e-01 | 93.5% | 56.7% |
| 8h6qD01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.62 | 43.0 | 2.75e-01 | 72.6% | 50.5% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.61 | 44.0 | 4.01e-01 | 75.8% | 88.7% |
| 2gtvX00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.61 | 50.0 | 4.38e-01 | 98.4% | 75.0% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.60 | 44.0 | 3.94e-01 | 75.8% | 85.4% |
| 1bccH00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.59 | 39.0 | 3.82e-01 | 72.6% | 62.1% |
| 5jfqB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 48.0 | 3.09e-01 | 91.9% | 48.4% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.59 | 49.0 | 4.39e-01 | 96.8% | 83.7% |
| 3ipiA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.59 | 53.0 | 3.44e-01 | 100.0% | 34.7% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 50.0 | 4.24e-01 | 98.4% | 85.2% |
| 3mg2B01 | 1.10.2090.10 | Mainly Alpha › Orthogonal Bundle › orange carotenoid protein, domain 2 › Orange carotenoid-binding protein, N-terminal domain | 0.58 | 45.0 | 3.46e-01 | 85.5% | 99.3% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 42.0 | 3.94e-01 | 79.0% | 79.5% |
| 2r8wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 44.0 | 2.88e-01 | 90.3% | 17.8% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.57 | 37.0 | 3.66e-01 | 72.6% | 61.2% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.57 | 41.0 | 3.50e-01 | 74.2% | 54.2% |
| 2hxoA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.56 | 45.0 | 3.54e-01 | 90.3% | 83.3% |
| 3f8tA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 2.96e-01 | 95.2% | 82.7% |
| 4hfvA02 | 6.10.280.170 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Substrate of the Dot/Icm secretion system | 0.54 | 37.0 | 3.57e-01 | 100.0% | 62.0% |
| 4m9aA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 44.0 | 3.68e-01 | 95.2% | 63.9% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.54 | 46.0 | 3.70e-01 | 96.8% | 72.6% |
| 2qkdA04 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.54 | 39.0 | 3.15e-01 | 77.4% | 88.2% |
| 4axsA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.53 | 44.0 | 2.95e-01 | 100.0% | 86.6% |
| 6g94A00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.53 | 43.0 | 3.08e-01 | 87.1% | 49.4% |
| 3wfdC00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.51 | 41.0 | 3.23e-01 | 90.3% | 64.8% |
| 1zoyA03 | 1.20.58.100 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain | 0.51 | 38.0 | 3.19e-01 | 82.3% | 63.2% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.50 | 44.0 | 3.44e-01 | 100.0% | 57.0% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4599948 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 53.0 | 3.87e-01 | 83.9% | 28.2% |
| 4857248 | 5064.1.1.1 ↗ | alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL | 0.73 | 63.0 | 4.95e-01 | 98.4% | 75.9% |
| 5040210 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.68 | 48.0 | 4.12e-01 | 74.2% | 69.5% |
| 3607851 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.66 | 48.0 | 3.14e-01 | 100.0% | 18.1% |
| 4024514 | 5059.1.1.8 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › Mg_trans_NIPA | 0.66 | 55.0 | 4.50e-01 | 91.9% | 74.8% |
| 3441543 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.65 | 45.0 | 3.64e-01 | 74.2% | 40.0% |
| 3614344 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.65 | 53.0 | 3.19e-01 | 93.5% | 23.0% |
| 3386452 | 5050.1.1.21 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › FTR1 | 0.64 | 55.0 | 4.28e-01 | 100.0% | 91.0% |
| 5068089 | 283.1.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase | 0.64 | 55.0 | 4.51e-01 | 96.8% | 98.3% |
| 4554168 | 1079.1.1.13 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp | 0.63 | 53.0 | 3.98e-01 | 100.0% | 81.7% |
| 3686439 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.63 | 54.0 | 3.68e-01 | 98.4% | 56.7% |
| 3496715 | 109.4.1.298 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VPS15-like_hel | 0.63 | 51.0 | 2.93e-01 | 90.3% | 9.1% |
| 3660599 | 5069.1.1.55 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF1218 | 0.62 | 48.0 | 3.50e-01 | 82.3% | 88.5% |
| 3179945 | 616.1.1.23 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › PF28719 | 0.62 | 53.0 | 4.55e-01 | 96.8% | 89.0% |
| 3235995 | 108.1.1.21 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › SPARC_Ca_bdg | 0.61 | 43.0 | 3.46e-01 | 74.2% | 83.3% |
| 3801933 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.61 | 45.0 | 3.58e-01 | 79.0% | 41.6% |
| 3606343 | 593.1.1.0 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like | 0.60 | 46.0 | 3.09e-01 | 87.1% | 73.3% |
| 3720209 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 49.0 | 2.94e-01 | 95.2% | 38.6% |
| 4674000 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.59 | 50.0 | 3.97e-01 | 98.4% | 71.9% |
| 3169094 | 4207.1.1.43 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › THOC7 | 0.59 | 42.0 | 3.34e-01 | 74.2% | 43.3% |
| 4981233 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.59 | 42.0 | 2.79e-01 | 77.4% | 16.8% |
| 3648942 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.59 | 47.0 | 3.46e-01 | 85.5% | 80.0% |
| 56798 | 150.7.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE | 0.59 | 44.0 | 4.08e-01 | 79.0% | 93.4% |
| 3691483 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.58 | 48.0 | 3.04e-01 | 95.2% | 32.2% |
| 4342890 | 2484.1.1.264 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3800 | 0.58 | 44.0 | 3.02e-01 | 93.5% | 20.8% |
| 5026028 | 3393.1.1.3 ↗ | extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › DUF3311 | 0.57 | 40.0 | 4.00e-01 | 74.2% | 86.2% |
| 4344828 | 2004.1.1.85 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase | 0.57 | 39.0 | 2.63e-01 | 75.8% | 19.7% |
| 3287123 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.56 | 43.0 | 4.06e-01 | 91.9% | 69.4% |
| 3191600 | 321.1.1.0 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase | 0.56 | 41.0 | 2.80e-01 | 79.0% | 54.3% |
| 2089746 | 129.1.1.46 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › TYRAAT1_C | 0.56 | 46.0 | 4.15e-01 | 91.9% | 90.7% |
| 3355967 | 5031.1.1.4 ↗ | extended segments › Photosystem II reaction center protein J, PsbJ › Photosystem II reaction center protein J, PsbJ › Photosystem II reaction center protein J, PsbJ › Yip1 | 0.56 | 50.0 | 3.58e-01 | 95.2% | 55.6% |
| 3695788 | 109.54.1.12 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › PF28770 | 0.55 | 43.0 | 2.75e-01 | 85.5% | 18.1% |
| 3586486 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.55 | 43.0 | 2.62e-01 | 87.1% | 24.5% |
| 3740666 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 44.0 | 3.14e-01 | 100.0% | 44.1% |
| 3488061 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 43.0 | 3.00e-01 | 91.9% | 52.6% |
| 4188764 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.53 | 45.0 | 3.74e-01 | 100.0% | 79.2% |
| 3173920 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 44.0 | 2.83e-01 | 95.2% | 54.4% |
| 3601375 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 40.0 | 2.76e-01 | 85.5% | 32.2% |
| 3288707 | 191.1.1.1 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 | 0.51 | 40.0 | 3.14e-01 | 93.5% | 81.9% |
| 3665032 | 2003.1.2.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2,Pyr_redox_2 | 0.51 | 38.0 | 2.60e-01 | 80.6% | 86.8% |
| 3412831 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.51 | 45.0 | 3.42e-01 | 100.0% | 72.7% |
| 3712226 | 101.1.1.67 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 | 0.50 | 39.0 | 3.42e-01 | 88.7% | 54.7% |