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MZ568828.1__QYW06275.1__MuM162_p34__00034

Bact-Vir

MZ568828.1__QYW06275.1__MuM162_p34__00034

Identity

Accession:
MZ568828 ↗
Kingdom:
phage

Quality

90.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shewanella_phage_vB_SspM_MuM16-2

TaxID: 2866685

Cluster

View cluster (159 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-42_67-110_140-178
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.59 52.0 4.80e-01 97.2% 96.4%
3j4uH00 2.60.120.1110 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 4.59e-01 96.2% 88.6%
4c91A04 2.60.120.1620 Mainly Beta › Sandwich › Jelly Rolls › 0.57 50.0 4.14e-01 96.2% 79.9%
1pm4A00 2.60.120.510 Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm 0.57 49.0 4.73e-01 96.2% 83.8%
5xnrA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 48.0 4.59e-01 96.2% 83.5%
2jdaB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 48.0 4.38e-01 95.3% 73.2%
4d7yA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 4.57e-01 99.1% 96.2%
2d7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 34.0 3.81e-01 80.2% 84.4%
2w47A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 4.41e-01 97.2% 92.6%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.87e-01 84.9% 83.5%
2rikA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 36.0 3.81e-01 88.7% 78.3%
3uamC00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.53 45.0 3.76e-01 96.2% 95.3%
2y3aA02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.53 37.0 3.43e-01 73.6% 98.6%
1rgxA02 2.60.40.4230 Mainly Beta › Sandwich › Immunoglobulin-like › Resistin head domain 0.53 30.0 3.58e-01 92.5% 90.6%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 4.01e-01 93.4% 88.0%
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.52 43.0 4.53e-01 94.3% 99.0%
2dibA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 4.09e-01 90.6% 88.7%
4xvhA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 4.06e-01 91.5% 84.1%
3w5mA04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 4.25e-01 94.3% 91.7%
2zkmX04 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 37.0 3.47e-01 75.5% 95.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3642389 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.61 54.0 5.44e-01 96.2% 98.1%
5039612 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 50.0 4.85e-01 90.6% 99.2%
5083661 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 53.0 5.31e-01 100.0% 97.2%
3596678 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 49.0 4.91e-01 94.3% 100.0%
1121 10.32.1.35 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › YpM 0.57 49.0 4.73e-01 96.2% 83.8%
4944602 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 49.0 4.42e-01 98.1% 76.7%
5046033 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 49.0 4.59e-01 98.1% 94.6%
5044775 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 46.0 4.69e-01 98.1% 92.4%
4276336 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.55 48.0 4.37e-01 97.2% 95.2%
3421265 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.54 48.0 4.03e-01 100.0% 90.3%
3676965 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 44.0 4.01e-01 92.5% 82.9%
3510331 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 46.0 4.37e-01 100.0% 95.2%
3234996 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 45.0 4.36e-01 99.1% 85.8%
5047632 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.51 43.0 4.33e-01 97.2% 90.0%
3226207 11.1.1.822 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.51 36.0 4.04e-01 94.3% 98.8%
3584994 11.1.1.97 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 34.0 3.62e-01 97.2% 76.8%
3224890 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 3.97e-01 90.6% 100.0%
3224982 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 41.0 2.85e-01 87.7% 56.1%
D2 medium residues 43-66_111-139
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rj8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.84 74.0 5.42e-01 100.0% 60.7%
6mkbA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.71 61.0 4.39e-01 100.0% 62.5%
3ihxC01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.55 47.0 3.66e-01 100.0% 87.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3912537 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.74 65.0 4.80e-01 100.0% 67.9%
2485685 5.5.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like 0.60 32.0 3.50e-01 86.8% 62.8%
3808737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 37.0 3.61e-01 94.3% 60.0%
3593328 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 41.0 3.97e-01 88.7% 100.0%