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MZ568829.1__QYW06293.1__M163_p03__00003

Bact-Vir

MZ568829.1__QYW06293.1__M163_p03__00003

Identity

Accession:
MZ568829 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Arsenicumvirus› Shewanella_phage_vB_SspM_M16-3

TaxID: 2866684

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-57
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.77 68.0 6.07e-01 100.0% 72.4%
7rsfA01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 57.0 4.49e-01 94.3% 100.0%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.71 61.0 5.81e-01 100.0% 84.1%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.66 47.0 4.16e-01 100.0% 51.3%
1tdjA03 3.40.1020.10 Alpha Beta › 3-Layer(aba) Sandwich › Biosynthetic Threonine Deaminase; domain 3 › Biosynthetic Threonine Deaminase; Domain 3 0.65 53.0 3.84e-01 94.3% 49.1%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 54.0 4.44e-01 100.0% 100.0%
2j58A03 3.30.1950.10 Alpha Beta › 2-Layer Sandwich › wza like fold › wza like domain 0.64 52.0 4.65e-01 96.2% 100.0%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 50.0 4.40e-01 90.6% 93.8%
2hw0A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 53.0 4.17e-01 98.1% 64.3%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 53.0 4.67e-01 100.0% 97.5%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 50.0 4.82e-01 100.0% 83.6%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.60 49.0 4.20e-01 98.1% 93.8%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.60 48.0 4.19e-01 100.0% 90.4%
2g9oA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 47.0 4.29e-01 96.2% 97.4%
5mz2I00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.58 46.0 3.54e-01 92.5% 38.8%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 4.13e-01 100.0% 85.1%
1rlhA02 3.40.1520.10 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like 0.57 38.0 3.24e-01 71.7% 67.3%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 48.0 4.26e-01 100.0% 98.8%
1kvkA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.56 44.0 3.32e-01 90.6% 95.9%
4n68A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 40.0 3.52e-01 100.0% 46.5%
2ee2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.59e-01 100.0% 51.7%
2gj2A00 3.30.70.2070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › VP9 protein domain 0.55 44.0 4.02e-01 96.2% 91.1%
3j7ye00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 44.0 3.47e-01 98.1% 66.4%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.55 44.0 3.58e-01 98.1% 54.7%
6bq9A02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 39.0 3.35e-01 83.0% 83.0%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.21e-01 100.0% 50.6%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 42.0 3.65e-01 96.2% 94.7%
2bopA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 42.0 3.72e-01 94.3% 96.5%
2mzsA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 43.0 3.61e-01 96.2% 79.8%
4ag4A02 2.60.120.1190 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.08e-01 100.0% 30.9%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 37.0 3.02e-01 81.1% 64.5%
5mybA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.34e-01 100.0% 47.9%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 43.0 3.68e-01 100.0% 76.3%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 35.0 3.39e-01 98.1% 59.1%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 38.0 3.33e-01 84.9% 77.7%
4p78A00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 3.53e-01 90.6% 94.2%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.51e-01 98.1% 51.0%
7o49B01 3.30.70.2110 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 40.0 3.48e-01 92.5% 97.8%
1cx1A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 40.0 3.07e-01 98.1% 60.1%
7sf2D01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 2.94e-01 98.1% 29.2%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3186804 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 58.0 6.25e-01 92.5% 100.0%
3666791 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 60.0 6.17e-01 100.0% 100.0%
199962 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.71 61.0 5.81e-01 100.0% 84.1%
4364088 3115.4.1.0 ↗ a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.70 55.0 5.84e-01 88.7% 100.0%
4974581 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.69 57.0 4.66e-01 98.1% 100.0%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.69 59.0 5.58e-01 100.0% 89.2%
4030911 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.68 59.0 5.10e-01 100.0% 97.6%
3416854 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.67 56.0 4.00e-01 100.0% 33.7%
3989300 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.67 55.0 4.45e-01 100.0% 46.4%
4537345 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.66 57.0 4.96e-01 100.0% 83.5%
4950751 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.64 54.0 4.10e-01 100.0% 97.1%
3200701 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.63 51.0 4.54e-01 92.5% 96.2%
3210219 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 52.0 4.26e-01 100.0% 75.5%
5021963 304.8.1.116 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3303 0.61 51.0 4.19e-01 98.1% 71.4%
3175177 304.24.1.6 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.61 53.0 4.77e-01 100.0% 97.3%
5058931 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.61 49.0 4.13e-01 96.2% 100.0%
4027198 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 40.0 3.35e-01 71.7% 38.0%
3415245 4342.1.1.1 ↗ alpha complex topology › Tex N-terminal region-like › Tex N-terminal region-like › Tex N-terminal region-like › Tex_central_region 0.60 45.0 3.19e-01 88.7% 77.0%
3460588 207.1.1.35 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8,Island 0.59 46.0 3.00e-01 96.2% 16.6%
3587356 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.59 50.0 4.25e-01 98.1% 84.4%
3547635 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.59 43.0 3.68e-01 100.0% 45.0%
3631449 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 46.0 2.85e-01 98.1% 12.8%
4045503 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.59 49.0 4.45e-01 98.1% 97.3%
4015999 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.58 43.0 3.18e-01 81.1% 46.9%
4191065 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.57 45.0 4.12e-01 90.6% 90.7%
5077572 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.57 43.0 3.99e-01 88.7% 92.0%
1318644 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.57 46.0 4.12e-01 98.1% 91.5%
4863191 3662.1.1.3 ↗ a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC4 0.56 40.0 3.31e-01 81.1% 61.9%
3742058 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 38.0 2.28e-01 73.6% 15.3%
4988226 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.56 42.0 3.74e-01 90.6% 94.4%
3899364 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.68e-01 96.2% 61.8%
4105022 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.56 45.0 3.90e-01 96.2% 83.3%
4592879 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.55 45.0 3.08e-01 100.0% 76.9%
3513335 10.1.1.83 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.55 46.0 3.16e-01 100.0% 75.3%
3403464 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.54 41.0 4.06e-01 98.1% 80.0%
3197773 10.12.1.52 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_8 0.54 45.0 2.84e-01 100.0% 19.0%
4399086 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.54 43.0 3.85e-01 98.1% 85.9%
5067631 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.54 48.0 3.77e-01 100.0% 88.2%
3759361 5095.1.1.0 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen 0.53 43.0 3.05e-01 94.3% 93.0%
3245711 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 44.0 3.54e-01 100.0% 67.5%
4026778 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.52 43.0 3.80e-01 94.3% 97.5%
3184485 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 43.0 3.57e-01 100.0% 50.0%
3664975 207.1.1.323 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRRNT_2, LRR_6, LRR_8, Island 0.52 41.0 2.34e-01 96.2% 31.4%
5076740 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 42.0 3.47e-01 94.3% 80.0%
5077636 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.51 40.0 3.57e-01 88.7% 78.8%
3962339 4014.1.1.0 ↗ a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase 0.51 37.0 2.72e-01 84.9% 40.0%
3581044 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.50 37.0 3.30e-01 98.1% 52.9%
3249243 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 42.0 3.39e-01 100.0% 66.9%