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MZ568829.1__QYW06338.1__M163_p48__00048
Bact-VirMZ568829.1__QYW06338.1__M163_p48__00048
Identity
- Accession:
- MZ568829 ↗
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Peduoviridae›
Arsenicumvirus›
Shewanella_phage_vB_SspM_M16-3
TaxID: 2866684
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-62
Domain cluster:
rep: NC_005344.1__NP_958215.1__Sf6p40__00039__D4-63
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13560.13 best | HTH_31 | 36.5 | 6.90e-09 | 98.3% | 85.9% |
| PF12844.14 | HTH_19 | 35.4 | 1.20e-08 | 93.3% | 73.4% |
| PF13443.13 | HTH_26 | 26.9 | 6.20e-06 | 91.7% | 85.7% |
| PF01381.29 | HTH_3 | 56.2 | 3.90e-15 | 90.0% | 100.0% |
D2
high
residues 79-201
Domain cluster:
rep: MK448705.1__QBX15854.1__Javan215_0051__00005__D138-257
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00717.29 best | Peptidase_S24 | 97.4 | 6.10e-28 | 95.9% | 100.0% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f39A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.93 | 68.0 | 7.51e-01 | 74.0% | 93.1% |
| 1ay9A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.87 | 66.0 | 7.09e-01 | 78.0% | 88.9% |
| 1b12C01 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.82 | 59.0 | 5.96e-01 | 73.2% | 98.3% |
| 2fjrA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.80 | 64.0 | 6.69e-01 | 100.0% | 90.3% |
| 3k2zA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.78 | 70.0 | 7.19e-01 | 95.9% | 97.5% |
| 1jheA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.76 | 71.0 | 7.14e-01 | 100.0% | 98.4% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 42.0 | 5.07e-01 | 95.9% | 100.0% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 37.0 | 4.43e-01 | 96.7% | 88.7% |
| 4me8A00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.56 | 38.0 | 3.98e-01 | 70.7% | 100.0% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 38.0 | 4.14e-01 | 91.9% | 94.1% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4007999 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.97 | 95.0 | 9.12e-01 | 100.0% | 92.6% |
| 4646593 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.96 | 93.0 | 8.97e-01 | 100.0% | 93.3% |
| 3945057 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.89 | 67.0 | 6.72e-01 | 78.9% | 76.0% |
| 4075150 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.86 | 66.0 | 5.49e-01 | 78.9% | 50.3% |
| 3965029 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.84 | 80.0 | 7.59e-01 | 100.0% | 92.9% |
| 5065747 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.84 | 59.0 | 6.94e-01 | 74.0% | 98.9% |
| 4952498 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.84 | 59.0 | 6.62e-01 | 72.4% | 100.0% |
| 4406602 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.84 | 79.0 | 7.58e-01 | 100.0% | 93.5% |
| 4943011 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.84 | 58.0 | 6.62e-01 | 71.5% | 97.9% |
| 4071971 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.83 | 77.0 | 7.25e-01 | 100.0% | 82.8% |
| 3164339 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.83 | 79.0 | 7.22e-01 | 100.0% | 86.4% |
| 4987744 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.82 | 58.0 | 5.64e-01 | 72.4% | 73.3% |
| 3963760 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.82 | 78.0 | 7.36e-01 | 100.0% | 92.3% |
| 3963450 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.82 | 78.0 | 7.52e-01 | 100.0% | 98.5% |
| 4493478 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.81 | 77.0 | 7.57e-01 | 100.0% | 94.6% |
| 4259069 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 61.0 | 5.05e-01 | 77.2% | 49.5% |
| 4331428 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.81 | 77.0 | 7.31e-01 | 100.0% | 88.6% |
| 4036705 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.80 | 75.0 | 7.27e-01 | 100.0% | 89.6% |
| 4958339 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.80 | 56.0 | 5.88e-01 | 70.7% | 80.0% |
| 4447540 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.80 | 74.0 | 7.00e-01 | 100.0% | 83.4% |
| 3290509 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.80 | 56.0 | 6.46e-01 | 89.4% | 97.8% |
| 4034190 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.80 | 72.0 | 7.06e-01 | 98.4% | 90.8% |
| 3970039 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.79 | 75.0 | 7.14e-01 | 100.0% | 96.4% |
| 4525683 | 4.11.1.3 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C | 0.79 | 64.0 | 6.52e-01 | 100.0% | 87.3% |
| 3974846 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.79 | 60.0 | 6.37e-01 | 78.9% | 90.0% |
| 4034335 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.78 | 66.0 | 7.03e-01 | 94.3% | 100.0% |
| 3980359 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.77 | 73.0 | 6.99e-01 | 100.0% | 95.0% |
| 5054196 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.77 | 62.0 | 5.75e-01 | 83.7% | 88.7% |
| 4999430 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.77 | 60.0 | 6.08e-01 | 94.3% | 82.5% |
| 3266698 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.77 | 62.0 | 6.02e-01 | 83.7% | 88.9% |
| 3164898 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.76 | 57.0 | 6.38e-01 | 98.4% | 100.0% |
| 4937389 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.76 | 58.0 | 6.16e-01 | 100.0% | 88.2% |
| 3964944 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.75 | 71.0 | 6.74e-01 | 100.0% | 97.1% |
| 3989651 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.75 | 63.0 | 5.19e-01 | 86.2% | 88.9% |
| 4949773 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.73 | 52.0 | 4.94e-01 | 73.2% | 62.1% |
| 3615426 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.73 | 59.0 | 5.48e-01 | 84.6% | 76.0% |
| 3715285 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.72 | 58.0 | 5.36e-01 | 84.6% | 73.5% |
| 3407848 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.68 | 40.0 | 4.55e-01 | 97.6% | 75.8% |
| None | — | 0.66 | 63.0 | 5.51e-01 | 99.2% | 95.9% | |
| 3926623 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.57 | 34.0 | 4.22e-01 | 76.4% | 98.6% |
| 3504519 | 4.11.1.1 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 | 0.51 | 46.0 | 4.54e-01 | 95.1% | 96.9% |
| 3607898 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.50 | 23.0 | 3.27e-01 | 73.2% | 96.4% |