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MZ570427.1__QYC50722.1__X__00023

Bact-Vir

MZ570427.1__QYC50722.1__X__00023

Identity

Accession:
MZ570427 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 86-150
PDB
Domain cluster: representative
CATH (77)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tulB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.93 88.0 6.71e-01 100.0% 63.9%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.93 88.0 6.36e-01 100.0% 79.2%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.93 88.0 6.18e-01 100.0% 41.7%
2fcwA00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.92 87.0 7.18e-01 100.0% 64.2%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.92 83.0 8.37e-01 100.0% 98.4%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.91 86.0 7.11e-01 100.0% 70.8%
3r2kA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.91 84.0 6.16e-01 98.5% 41.6%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.91 83.0 8.06e-01 96.9% 100.0%
6h9xA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.90 85.0 7.06e-01 100.0% 62.7%
1jgcA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.90 83.0 6.02e-01 98.5% 40.0%
1s3qG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.90 83.0 5.99e-01 98.5% 39.9%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.90 84.0 8.20e-01 98.5% 95.7%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.90 61.0 6.79e-01 92.3% 88.5%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 85.0 8.08e-01 100.0% 89.0%
2gd5A00 6.10.140.1230 Special › Helix non-globular › Helix Hairpins › 0.89 82.0 6.20e-01 100.0% 47.2%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.89 76.0 7.19e-01 95.4% 77.6%
2rd0B00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.89 82.0 6.24e-01 100.0% 64.0%
3ggyA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.88 81.0 5.71e-01 100.0% 36.0%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.88 82.0 8.11e-01 100.0% 97.0%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.88 80.0 7.22e-01 100.0% 74.4%
3uo2B02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.88 74.0 6.69e-01 92.3% 69.0%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.87 63.0 7.02e-01 78.5% 96.1%
2fupA00 1.20.58.300 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like 0.86 78.0 6.19e-01 100.0% 52.8%
3pwfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.86 74.0 5.78e-01 93.8% 46.6%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.86 73.0 6.29e-01 92.3% 89.8%
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.85 69.0 5.55e-01 84.6% 48.7%
3r84A00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 73.0 6.77e-01 100.0% 74.1%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.85 78.0 5.53e-01 98.5% 36.6%
3r6nA02 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.85 77.0 5.75e-01 100.0% 43.2%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.85 70.0 5.40e-01 87.7% 42.9%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.85 76.0 5.10e-01 100.0% 44.7%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.85 77.0 6.57e-01 100.0% 66.7%
1sziA02 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.85 78.0 5.98e-01 100.0% 47.4%
4lwsA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.84 76.0 6.57e-01 100.0% 85.0%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.84 76.0 7.13e-01 100.0% 87.3%
2dq0A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.84 76.0 6.38e-01 100.0% 61.7%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.84 78.0 6.77e-01 100.0% 100.0%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.83 71.0 6.65e-01 92.3% 100.0%
3qhbA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.83 75.0 5.38e-01 100.0% 36.9%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.83 74.0 7.32e-01 98.5% 98.5%
2c41C01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.83 75.0 5.60e-01 98.5% 43.0%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.83 74.0 7.14e-01 98.5% 95.8%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.82 61.0 4.86e-01 78.5% 41.1%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.82 74.0 6.39e-01 100.0% 77.8%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.82 72.0 7.34e-01 96.9% 100.0%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.81 71.0 6.44e-01 96.9% 95.4%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.81 70.0 7.16e-01 95.4% 98.4%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.81 66.0 6.76e-01 87.7% 91.9%
7sgrA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.81 72.0 4.57e-01 100.0% 22.3%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.81 65.0 6.34e-01 98.5% 80.0%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.80 67.0 6.22e-01 92.3% 100.0%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.80 74.0 6.57e-01 100.0% 72.2%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 62.0 6.72e-01 83.1% 100.0%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.79 73.0 6.77e-01 100.0% 83.7%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.79 69.0 4.76e-01 100.0% 30.6%
4e4eA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.78 70.0 6.85e-01 100.0% 100.0%
2bdeA03 1.20.58.1160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 68.0 6.50e-01 100.0% 85.7%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.78 69.0 5.67e-01 100.0% 57.3%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.77 64.0 6.47e-01 95.4% 100.0%
1luwA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.76 67.0 6.76e-01 100.0% 100.0%
3hwcA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.76 66.0 4.64e-01 100.0% 34.8%
1rqgA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.76 64.0 4.87e-01 93.8% 41.7%
4ijjB00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.75 65.0 5.27e-01 100.0% 52.3%
3onjA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.75 65.0 5.74e-01 100.0% 66.0%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.74 65.0 5.95e-01 98.5% 90.6%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.74 51.0 5.65e-01 96.9% 100.0%
1e52A00 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.73 58.0 6.23e-01 86.2% 100.0%
4gzrB00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 63.0 6.02e-01 96.9% 85.7%
4dciA00 6.10.140.1110 Special › Helix non-globular › Helix Hairpins › 0.73 64.0 4.94e-01 100.0% 46.3%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.73 62.0 5.56e-01 100.0% 99.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.72 61.0 5.49e-01 96.9% 69.2%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.69 61.0 5.90e-01 98.5% 94.6%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.69 58.0 5.77e-01 98.5% 100.0%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.69 57.0 5.56e-01 96.9% 85.9%
4od4A02 1.20.120.1780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase 0.69 53.0 4.45e-01 86.2% 58.8%
3nrxA00 1.20.58.1520 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 54.0 4.47e-01 90.8% 60.2%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.64 55.0 5.65e-01 92.3% 98.4%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3484742 3922.1.1.197 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › BBS2_hp 0.95 90.0 8.05e-01 100.0% 80.0%
3483188 605.2.1.7 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › BBS2_hp 0.94 89.0 8.01e-01 100.0% 80.0%
3166880 906.1.1.0 few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger 0.94 87.0 8.49e-01 98.5% 95.7%
4018440 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.93 88.0 7.59e-01 100.0% 83.2%
3256134 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.93 88.0 6.93e-01 100.0% 56.7%
3491418 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.93 88.0 8.35e-01 100.0% 96.0%
3186698 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.93 88.0 8.07e-01 100.0% 85.0%
3520009 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.93 88.0 8.07e-01 100.0% 98.8%
3748986 3755.3.1.322 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LUC7 0.92 87.0 6.12e-01 100.0% 37.1%
3907712 5086.1.1.150 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › LUC7 0.92 87.0 8.22e-01 100.0% 88.0%
5047072 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.92 87.0 6.27e-01 100.0% 51.2%
3626769 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.92 86.0 7.60e-01 100.0% 90.0%
4784164 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.92 86.0 8.36e-01 98.5% 100.0%
3699098 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.92 86.0 7.95e-01 100.0% 97.5%
3840552 5086.1.1.90 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › V_ATPase_I 0.92 86.0 6.18e-01 100.0% 41.2%
4969096 3926.1.1.0 alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D 0.91 86.0 5.56e-01 100.0% 30.0%
3595002 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.91 87.0 7.30e-01 100.0% 68.0%
3175368 376.1.3.81 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Rbsn 0.91 79.0 7.52e-01 92.3% 80.0%
4345017 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.91 85.0 4.79e-01 100.0% 15.4%
5025381 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.91 85.0 5.22e-01 100.0% 41.8%
3931719 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.91 84.0 6.45e-01 100.0% 49.6%
3487203 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.91 85.0 7.64e-01 100.0% 91.8%
3944931 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.90 84.0 7.43e-01 100.0% 75.6%
4477580 5086.1.1.118 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › BBS2_hp 0.90 84.0 7.58e-01 100.0% 80.0%
4024002 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.90 83.0 5.93e-01 100.0% 38.3%
315449 192.8.1.2 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Hanta_nucleocap 0.90 84.0 7.94e-01 100.0% 97.4%
4809272 3291.1.1.4 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.90 83.0 6.62e-01 100.0% 56.2%
4551675 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.90 83.0 6.84e-01 100.0% 61.8%
4338795 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.90 85.0 6.00e-01 100.0% 40.0%
3239791 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.90 83.0 5.85e-01 100.0% 41.7%
3925617 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.89 83.0 7.51e-01 100.0% 80.0%
3393794 3922.1.1.211 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › DRC7_C 0.89 84.0 6.38e-01 100.0% 50.4%
3920715 2004.1.1.674 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21, AAA_23, SbcC_Walker_B 0.89 82.0 4.71e-01 98.5% 18.4%
3213526 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.89 83.0 6.91e-01 100.0% 64.8%
3268739 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.89 80.0 6.81e-01 96.9% 70.0%
4974450 3291.1.1.4 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 0.88 81.0 5.80e-01 100.0% 38.3%
3330281 4992.1.1.0 extended segments › RelB-like › RelB-like › RelB-like 0.88 83.0 6.76e-01 100.0% 60.0%
3567670 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.88 82.0 7.23e-01 100.0% 75.6%
4029165 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.88 77.0 4.53e-01 100.0% 14.3%
4568749 2004.1.1.585 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21, AAA_23 0.87 80.0 4.91e-01 100.0% 20.0%
3271459 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.87 81.0 6.00e-01 100.0% 44.7%
3903422 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.86 79.0 6.32e-01 100.0% 55.8%
3243293 3291.1.1.1 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.86 78.0 5.68e-01 100.0% 40.6%
4784166 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.86 78.0 7.58e-01 98.5% 100.0%
5079778 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 76.0 4.50e-01 100.0% 30.1%
3882466 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.83 76.0 6.21e-01 100.0% 57.4%
4933425 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.78 70.0 4.28e-01 100.0% 18.1%
3853063 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.78 68.0 5.58e-01 100.0% 56.7%
2323907 212.1.1.24 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.77 67.0 4.63e-01 100.0% 30.0%
3271624 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.77 66.0 4.03e-01 100.0% 15.6%
3487862 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.77 67.0 4.55e-01 100.0% 27.9%
4798159 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 66.0 6.37e-01 100.0% 89.5%
3607087 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.76 65.0 5.09e-01 100.0% 46.9%
5054469 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.75 65.0 5.64e-01 100.0% 74.3%
5002089 2004.1.1.144 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD_2 0.71 59.0 3.89e-01 98.5% 20.3%
D2 high residues 157-343
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 36.0 5.29e-01 90.9% 100.0%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 38.0 4.97e-01 96.3% 93.1%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 34.0 4.93e-01 97.3% 100.0%
3voqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 39.0 4.94e-01 98.4% 90.5%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 38.0 4.94e-01 94.7% 99.0%
4dixA02 2.30.29.140 Mainly Beta › Roll › PH-domain like › 0.66 37.0 4.52e-01 97.3% 82.4%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 32.0 4.53e-01 94.7% 98.9%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 37.0 4.69e-01 98.9% 93.6%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 34.0 4.65e-01 92.0% 100.0%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 36.0 4.66e-01 96.3% 94.4%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.65 37.0 4.77e-01 94.1% 99.0%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 37.0 4.77e-01 96.8% 98.1%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 37.0 4.72e-01 96.8% 100.0%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 37.0 4.32e-01 96.8% 82.9%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 38.0 4.58e-01 95.2% 91.1%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 37.0 4.65e-01 97.9% 100.0%
1dbhA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 36.0 4.30e-01 98.9% 83.6%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 33.0 4.14e-01 96.8% 87.6%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.59 35.0 4.24e-01 96.8% 87.9%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 38.0 4.59e-01 98.4% 97.7%
1wjmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 36.0 4.33e-01 99.5% 93.5%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 35.0 4.31e-01 96.3% 96.6%
4ctaA02 3.30.70.2860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 19.0 2.90e-01 99.5% 68.0%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 37.0 4.27e-01 100.0% 90.4%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 35.0 4.27e-01 98.4% 98.3%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 31.0 3.32e-01 98.9% 61.4%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.54 19.0 2.80e-01 78.6% 67.8%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 33.0 4.03e-01 92.5% 100.0%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 33.0 3.56e-01 86.6% 73.8%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742641 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.72 39.0 4.96e-01 97.9% 88.2%
3509508 220.1.1.44 beta barrels › PH domain-like › PH domain-like › PH domain-like › POB3_N 0.71 36.0 4.94e-01 93.0% 95.8%
4674129 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 37.0 4.85e-01 98.4% 90.5%
3707723 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 38.0 4.94e-01 98.4% 92.4%
3810543 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.70 37.0 4.79e-01 93.0% 87.3%
3627615 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.70 38.0 4.34e-01 96.8% 68.3%
3556738 220.1.1.40 beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.70 41.0 4.93e-01 96.3% 86.4%
3486733 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.69 36.0 4.95e-01 96.3% 96.9%
4203238 220.1.1.217 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.69 38.0 3.39e-01 96.8% 38.8%
4122019 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.69 37.0 4.63e-01 95.7% 84.3%
3902810 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.69 42.0 5.07e-01 100.0% 91.2%
3785687 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.68 37.0 4.73e-01 92.5% 87.0%
3572707 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 43.0 5.11e-01 98.4% 92.8%
3873956 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.68 37.0 4.56e-01 96.3% 82.5%
3801512 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 39.0 4.76e-01 97.9% 87.5%
3623434 220.1.1.58 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH-GRAM_MTMR6-like 0.67 42.0 4.95e-01 99.5% 89.2%
3595461 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 40.0 4.94e-01 95.7% 96.5%
3890418 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.66 38.0 4.92e-01 94.7% 100.0%
4488977 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 37.0 4.23e-01 96.8% 72.9%
3711017 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.66 36.0 4.82e-01 99.5% 100.0%
3937216 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.66 37.0 4.41e-01 96.8% 79.2%
4020256 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 37.0 4.39e-01 100.0% 79.2%
3312151 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 41.0 4.47e-01 95.2% 75.5%
3921926 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 36.0 4.40e-01 97.9% 83.3%
4030718 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 41.0 5.01e-01 98.4% 97.5%
3876167 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 37.0 3.88e-01 96.3% 60.0%
3875149 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 36.0 4.49e-01 98.9% 87.8%
3524527 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.65 35.0 4.42e-01 94.7% 88.2%
3304391 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 40.0 4.54e-01 94.1% 80.0%
3701622 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 42.0 4.72e-01 98.4% 82.0%
1177249 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 37.0 4.54e-01 96.3% 89.0%
3716892 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 41.0 4.92e-01 98.4% 96.7%
4019873 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.64 39.0 4.49e-01 98.4% 83.0%
3889522 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 36.0 4.42e-01 95.2% 85.8%
4591712 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 36.0 3.88e-01 94.7% 63.0%
3265410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 39.0 4.62e-01 95.7% 88.5%
3754865 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 38.0 4.45e-01 94.7% 83.7%
3494650 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 38.0 4.28e-01 100.0% 78.6%
3895387 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 35.0 4.37e-01 96.3% 88.7%
3996204 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 35.0 4.35e-01 96.8% 85.8%
3867284 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 39.0 2.76e-01 96.8% 21.5%
3598462 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 39.0 4.62e-01 95.7% 92.0%
3227023 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 36.0 3.71e-01 96.3% 57.8%
3528403 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 39.0 3.99e-01 96.3% 63.8%
3995979 220.1.1.34 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.61 36.0 4.20e-01 96.8% 81.5%
3827507 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.60 37.0 4.60e-01 98.4% 98.3%
5076004 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 37.0 4.59e-01 98.4% 96.6%
3680900 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.59 37.0 4.47e-01 95.7% 95.0%
3875067 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 35.0 3.67e-01 100.0% 62.9%
3704544 220.1.1.12 beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.59 37.0 4.09e-01 97.9% 78.6%
3907295 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 38.0 4.50e-01 99.5% 95.2%
3496967 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 37.0 4.26e-01 98.4% 84.3%
3277466 220.1.1.305 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26662 0.58 38.0 4.52e-01 95.7% 94.6%
4030499 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 37.0 4.28e-01 100.0% 88.1%
167832 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 38.0 4.59e-01 98.4% 97.7%
3639931 220.1.1.91 beta barrels › PH domain-like › PH domain-like › PH domain-like › Spo7_2_N 0.56 38.0 3.91e-01 100.0% 71.4%
3743248 220.1.1.70 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.56 41.0 4.25e-01 97.9% 78.9%
4140296 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 37.0 4.28e-01 98.4% 92.1%
3172489 220.1.1.91 beta barrels › PH domain-like › PH domain-like › PH domain-like › Spo7_2_N 0.54 44.0 3.85e-01 100.0% 58.5%
3744629 220.1.1.34 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.54 36.0 4.28e-01 95.7% 100.0%
3739038 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 37.0 4.16e-01 98.9% 91.7%
4186865 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.53 38.0 3.25e-01 98.4% 47.0%
3250440 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 34.0 4.00e-01 92.5% 91.1%
3701279 304.107.1.10 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › BBS7_pf 0.51 20.0 2.75e-01 96.8% 67.4%
3887124 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 38.0 3.99e-01 97.9% 82.3%
3743239 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.86e-01 100.0% 77.3%
3609866 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.51 40.0 4.19e-01 97.9% 88.0%
3595790 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 4.14e-01 97.9% 88.0%
3453221 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.50 38.0 3.72e-01 100.0% 71.7%