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MZ573780.2QYC50887.1X__00192

Bact-Vir

MZ573780.2__QYC50887.1__X__00192

Identity

Accession:: MZ573780 ↗
Kingdom:: phage

Quality

87.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mammaliicoccus_phage_vB_MscM-PMS3

TaxID: 2861056

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-55

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3r6nA02	1.20.58.1060	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.85	64.0	4.52e-01	80.0%	49.0%
1txjA00	2.170.150.10	Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	0.79	56.0	3.96e-01	76.4%	26.1%
1luwA01	1.10.287.990	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain	0.77	61.0	5.82e-01	90.9%	73.4%
3nyjA00	1.20.120.770	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain	0.75	66.0	4.56e-01	98.2%	30.9%
2qvaA02	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.73	55.0	5.62e-01	83.6%	83.0%
1z0jB00	4.10.860.20	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain	0.72	56.0	5.79e-01	83.6%	90.2%
1h6qA00	2.170.150.10	Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A	0.71	53.0	3.73e-01	81.8%	26.2%
1yzmA00	4.10.860.20	Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain	0.71	53.0	5.73e-01	83.6%	97.8%
1xzzA00	2.80.10.50	Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) ›	0.69	56.0	3.68e-01	87.3%	34.7%
1jalA03	1.10.150.300	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain	0.68	56.0	5.00e-01	92.7%	77.8%
4l0rB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.66	56.0	5.12e-01	98.2%	76.7%
4h63K00	1.10.287.3490	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.65	48.0	4.15e-01	85.5%	48.0%
2qkdA02	2.60.120.1040	Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain	0.63	50.0	3.87e-01	94.5%	57.1%
1y71A00	2.30.30.430	Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain	0.59	47.0	3.76e-01	89.1%	69.7%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4447644	2004.1.1.514 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B	0.80	65.0	3.83e-01	92.7%	12.2%
3998828	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.79	70.0	5.17e-01	100.0%	40.0%
3877354	3291.1.1.14 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › LAP2alpha	0.77	65.0	4.39e-01	92.7%	26.2%
4619538	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.73	61.0	4.83e-01	98.2%	45.2%
4206858	4992.1.1.23 ↗	extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N	0.73	61.0	4.83e-01	98.2%	45.2%
5011468	101.1.2.31 ↗	alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha	0.71	60.0	4.60e-01	98.2%	41.6%