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MZ573780.2__QYC50957.1__X__00057

Bact-Vir

MZ573780.2__QYC50957.1__X__00057

Identity

Accession:
MZ573780 ↗
Kingdom:
phage

Quality

49.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Mammaliicoccus_phage_vB_MscM-PMS3

TaxID: 2861056

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-96
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.65 45.0 4.94e-01 88.2% 87.0%
5oomJ01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.64 30.0 3.45e-01 91.4% 57.6%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.61 47.0 5.02e-01 89.2% 97.5%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 44.0 2.92e-01 77.4% 57.1%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.49e-01 98.9% 92.9%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.23e-01 92.5% 78.6%
6muwH00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 40.0 3.20e-01 78.5% 40.3%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.81e-01 78.5% 87.6%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 40.0 2.65e-01 78.5% 68.7%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 3.13e-01 98.9% 99.1%
2ztnA02 2.40.30.190 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 44.0 3.93e-01 100.0% 93.6%
4mmhA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 37.0 2.72e-01 78.5% 89.2%
1ab8A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 42.0 3.40e-01 90.3% 65.5%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027923 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 46.0 2.80e-01 74.2% 33.6%
3941423 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.64 46.0 4.77e-01 88.2% 82.4%
3720697 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 42.0 2.51e-01 72.0% 37.5%
3748418 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.60 44.0 3.03e-01 77.4% 64.3%
3415902 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 43.0 2.81e-01 76.3% 67.5%
3508327 5.1.4.265 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.59 45.0 3.05e-01 82.8% 95.8%
3523736 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.58 49.0 3.30e-01 91.4% 71.6%
3425770 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.60e-01 83.9% 51.6%
3826919 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 44.0 2.93e-01 83.9% 91.2%
3407411 5.1.4.293 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_EML_2 0.57 48.0 3.29e-01 91.4% 74.1%
3709449 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 40.0 2.80e-01 73.1% 59.3%
3878645 5.1.4.170 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 0.56 48.0 3.26e-01 91.4% 72.9%
4659283 5.1.4.293 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_EML_2 0.56 49.0 3.31e-01 93.5% 77.2%
4652260 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.56 42.0 2.84e-01 79.6% 47.6%
3477330 5.1.4.413 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML, Beta-prop_EML_2 0.56 48.0 2.86e-01 92.5% 89.4%
4861416 5.1.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › WD40 0.56 42.0 2.88e-01 80.6% 98.6%
3495412 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.56 48.0 3.20e-01 92.5% 81.1%
3498756 5.1.4.170 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 0.56 48.0 2.88e-01 92.5% 88.9%
3393982 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 41.0 2.69e-01 77.4% 83.6%
3597395 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 42.0 2.45e-01 81.7% 42.3%
3921178 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.56 41.0 2.76e-01 76.3% 54.1%
3639374 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 42.0 2.97e-01 82.8% 92.1%
3537640 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 42.0 2.90e-01 82.8% 96.8%
3706025 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 41.0 2.78e-01 79.6% 46.4%
3416138 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 41.0 2.69e-01 78.5% 46.7%
3246524 5.1.4.170 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 0.55 47.0 3.24e-01 92.5% 77.4%
3395174 5.1.4.158 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HPS5 0.54 40.0 2.72e-01 77.4% 75.2%
3230405 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 39.0 2.55e-01 76.3% 58.3%
3717302 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 3.03e-01 96.8% 85.6%
3878945 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 3.02e-01 90.3% 90.5%
3799291 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.53 45.0 3.08e-01 92.5% 75.9%
None — 0.53 41.0 2.83e-01 87.1% 90.9%
3845395 5.1.4.272 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.53 40.0 2.87e-01 82.8% 82.6%
4025186 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 44.0 2.79e-01 92.5% 75.9%
3896827 5.1.4.293 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_EML_2 0.52 39.0 2.82e-01 81.7% 79.7%
3583812 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 42.0 2.83e-01 92.5% 82.7%
3619283 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.51 46.0 3.08e-01 100.0% 87.6%
3625494 210.1.2.8 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.51 37.0 2.71e-01 77.4% 28.2%
3599577 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 40.0 2.75e-01 83.9% 49.6%
3926070 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 38.0 2.61e-01 79.6% 40.9%
4002773 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 43.0 2.87e-01 96.8% 92.5%
3652488 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 42.0 2.54e-01 96.8% 49.1%
3365300 5.1.5.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N, Beta-prop_IFT122_1st 0.51 46.0 3.17e-01 100.0% 94.9%
3688468 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 45.0 3.16e-01 100.0% 89.7%
D2 high residues 107-201
PDB
D3 medium residues 226-278
PDB