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MZ577098.1__QZI94984.1__Melnitz3EXVC039M_30__00029

Bact-Vir

MZ577098.1__QZI94984.1__Melnitz3EXVC039M_30__00029

Identity

Accession:
MZ577098 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Methylophilales_phage_Melnitz-3_EXVC039M

TaxID: 2832341

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 101-171
PDB
Domain cluster: rep: IMGVR_UViG_3300000154_000252-3300000154-SI47jul10_150mDRAFT_10055545__D35-106
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.62 37.0 2.99e-01 100.0% 31.8%
7nmqA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.61 47.0 2.93e-01 80.3% 74.3%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.58 45.0 2.87e-01 85.9% 80.9%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.57 41.0 2.78e-01 76.1% 42.6%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.56 37.0 3.50e-01 70.4% 53.9%
1hywA00 3.30.1580.10 Alpha Beta › 2-Layer Sandwich › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W 0.56 36.0 3.89e-01 76.1% 81.0%
1dkqA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 38.0 3.27e-01 74.6% 66.9%
1ltzA00 1.10.800.10 Mainly Alpha › Orthogonal Bundle › Phenylalanine Hydroxylase › Aromatic amino acid hydroxylase 0.54 45.0 3.09e-01 95.8% 63.5%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 38.0 3.04e-01 76.1% 86.5%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.52 39.0 3.31e-01 78.9% 82.5%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.55e-01 77.5% 73.3%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.75e-01 83.1% 80.0%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.61e-01 81.7% 78.3%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 37.0 3.17e-01 77.5% 78.8%
1jp4A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 39.0 2.97e-01 84.5% 67.6%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5044385 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.63 35.0 2.49e-01 100.0% 18.6%
3982462 4132.1.1.1 ↗ alpha bundles › IpaD-like › IpaD-like › IpaD-like › T3SS_TC 0.61 46.0 3.03e-01 80.3% 92.0%
4503081 101.1.2.57 ↗ alpha arrays › HTH › HTH › winged helix domain › EAP30 0.59 32.0 3.29e-01 98.6% 54.3%
4145802 3236.1.1.5 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 0.59 46.0 2.92e-01 85.9% 79.4%
3449129 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 35.0 3.18e-01 98.6% 45.3%
5070090 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.58 34.0 3.07e-01 100.0% 41.0%
4274382 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.56 41.0 3.77e-01 78.9% 68.1%
3955321 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.55 44.0 3.35e-01 93.0% 77.4%
3320244 53.1.1.4 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › XH 0.55 39.0 3.46e-01 74.6% 66.7%
4179317 3236.1.1.5 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 0.55 43.0 2.79e-01 85.9% 81.4%
5062051 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 33.0 3.49e-01 100.0% 66.2%
4973555 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 41.0 3.12e-01 80.3% 43.5%
4678990 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.53 37.0 3.01e-01 73.2% 57.9%
4955611 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 39.0 3.42e-01 76.1% 81.7%
3407351 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.52 41.0 3.67e-01 87.3% 59.0%
3530014 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.52 44.0 2.58e-01 100.0% 71.5%
4938126 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.45e-01 94.4% 83.3%
4976626 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.52 38.0 2.76e-01 80.3% 82.7%
4991449 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.52 43.0 3.41e-01 100.0% 42.5%
5004012 2004.1.1.714 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_13 0.52 38.0 2.50e-01 80.3% 73.1%
4926885 282.1.1.0 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain 0.51 39.0 3.33e-01 87.3% 49.2%
4963022 3236.1.1.23 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › DUF3100 0.51 38.0 2.71e-01 84.5% 87.8%
3291708 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 41.0 3.33e-01 93.0% 86.0%
4015532 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.50 41.0 2.43e-01 88.7% 75.7%