←Back to structures
MZ577098.1__QZI95011.1__Melnitz3EXVC039M_57__00056
Bact-VirMZ577098.1__QZI95011.1__Melnitz3EXVC039M_57__00056
Identity
- Accession:
- MZ577098 ↗
- Kingdom:
- phage
Quality
94.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Methylophilales_phage_Melnitz-3_EXVC039M
TaxID: 2832341
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-46
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pgvA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.73 | 53.0 | 4.04e-01 | 80.0% | 34.7% |
| 4dw8A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.72 | 51.0 | 3.84e-01 | 80.0% | 32.1% |
| 1nf2A02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.70 | 49.0 | 3.75e-01 | 80.0% | 32.1% |
| 5w1eA01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.69 | 52.0 | 3.46e-01 | 95.6% | 20.3% |
| 1g8mA03 | 3.40.140.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain | 0.69 | 55.0 | 3.96e-01 | 95.6% | 56.5% |
| 2qv8A00 | 3.55.40.10 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › minor pseudopilin epsh domain | 0.68 | 54.0 | 3.95e-01 | 95.6% | 67.4% |
| 2xmjA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 47.0 | 4.30e-01 | 80.0% | 57.1% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.65 | 46.0 | 3.71e-01 | 80.0% | 94.8% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.64 | 46.0 | 3.27e-01 | 75.6% | 35.5% |
| 3p0jA03 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.64 | 47.0 | 3.69e-01 | 80.0% | 70.5% |
| 1t3yA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 51.0 | 3.78e-01 | 95.6% | 45.0% |
| 1e6vB02 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.64 | 52.0 | 3.25e-01 | 97.8% | 44.3% |
| 4zohB02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.63 | 44.0 | 3.28e-01 | 73.3% | 90.8% |
| 2xf1A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.62 | 50.0 | 3.79e-01 | 95.6% | 51.6% |
| 3ey7A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.61 | 45.0 | 3.33e-01 | 80.0% | 32.2% |
| 3u5eU00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.61 | 43.0 | 3.48e-01 | 80.0% | 92.0% |
| 3r4cA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.60 | 42.0 | 3.25e-01 | 73.3% | 67.3% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.60 | 40.0 | 3.38e-01 | 95.6% | 38.6% |
| 4lq0A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.59 | 41.0 | 2.95e-01 | 80.0% | 22.4% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 47.0 | 3.08e-01 | 91.1% | 88.2% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.58 | 48.0 | 3.44e-01 | 97.8% | 43.9% |
| 1m4jA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 47.0 | 3.49e-01 | 95.6% | 48.9% |
| 2mp4A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 47.0 | 3.27e-01 | 97.8% | 49.1% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 40.0 | 3.20e-01 | 77.8% | 74.0% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.56 | 41.0 | 3.63e-01 | 84.4% | 75.3% |
| 7d27A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.56 | 45.0 | 2.89e-01 | 97.8% | 17.8% |
| 3jvvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 39.0 | 3.18e-01 | 77.8% | 75.0% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.55 | 46.0 | 3.58e-01 | 100.0% | 50.4% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 47.0 | 3.88e-01 | 100.0% | 67.8% |
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 3.02e-01 | 95.6% | 29.0% |
| 1r85A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 46.0 | 2.73e-01 | 100.0% | 27.0% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.57e-01 | 95.6% | 68.6% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 2.94e-01 | 93.3% | 37.7% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 35.0 | 3.18e-01 | 75.6% | 83.3% |
| 6hj2A00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 40.0 | 2.57e-01 | 95.6% | 43.4% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 35.0 | 2.71e-01 | 100.0% | 28.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4636695 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.76 | 52.0 | 4.48e-01 | 80.0% | 47.1% |
| 5032923 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.67 | 56.0 | 3.32e-01 | 93.3% | 30.6% |
| 4392601 | 304.36.1.1 ↗ | a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 | 0.63 | 43.0 | 3.77e-01 | 80.0% | 45.2% |
| 3164638 | 2006.1.1.37 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 | 0.62 | 52.0 | 3.21e-01 | 93.3% | 25.4% |
| 3482147 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.62 | 50.0 | 3.66e-01 | 95.6% | 45.0% |
| 4889342 | 1.1.5.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 | 0.61 | 42.0 | 2.74e-01 | 86.7% | 16.0% |
| 4271417 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.61 | 52.0 | 3.22e-01 | 95.6% | 31.5% |
| 4344263 | 2004.1.1.361 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UTP25_NTPase-like | 0.61 | 47.0 | 2.76e-01 | 84.4% | 20.0% |
| 3719755 | 2004.1.1.361 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UTP25_NTPase-like | 0.60 | 46.0 | 2.81e-01 | 84.4% | 25.3% |
| 4493066 | 2004.1.1.361 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UTP25_NTPase-like | 0.60 | 46.0 | 2.72e-01 | 84.4% | 21.7% |
| 420847 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.59 | 49.0 | 3.75e-01 | 97.8% | 52.5% |
| 4013658 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.58 | 47.0 | 3.46e-01 | 95.6% | 49.3% |
| 3268730 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.57 | 46.0 | 3.33e-01 | 97.8% | 38.7% |
| 2629457 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.57 | 47.0 | 3.44e-01 | 95.6% | 47.1% |
| 3588857 | 101.1.2.93 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Mga | 0.57 | 48.0 | 3.93e-01 | 95.6% | 72.9% |
| 3705026 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.57 | 44.0 | 3.23e-01 | 100.0% | 29.3% |
| 3597559 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.56 | 46.0 | 3.43e-01 | 97.8% | 46.9% |
| 3933905 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.56 | 43.0 | 3.28e-01 | 95.6% | 47.1% |
| 3705025 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.56 | 46.0 | 3.41e-01 | 100.0% | 57.0% |
| 3914632 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.55 | 42.0 | 3.20e-01 | 95.6% | 47.1% |
| 4965091 | 101.1.2.908 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF5787 | 0.55 | 39.0 | 3.25e-01 | 100.0% | 42.5% |
| 3557265 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.54 | 42.0 | 3.15e-01 | 95.6% | 45.5% |
| 2554619 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.54 | 43.0 | 2.55e-01 | 88.9% | 48.8% |
| 4616680 | 7577.1.1.2 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3 | 0.53 | 43.0 | 2.55e-01 | 93.3% | 16.5% |
| 4507638 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.52 | 41.0 | 2.75e-01 | 100.0% | 23.0% |
| 3174077 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 41.0 | 3.09e-01 | 91.1% | 67.2% |
| 3994958 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.52 | 43.0 | 3.18e-01 | 100.0% | 35.6% |
| 4400642 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.52 | 35.0 | 2.98e-01 | 73.3% | 72.9% |
| 4032391 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.52 | 40.0 | 3.37e-01 | 91.1% | 62.4% |
| 3939557 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.51 | 41.0 | 3.06e-01 | 100.0% | 52.9% |
| 4970576 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.51 | 40.0 | 2.75e-01 | 91.1% | 26.1% |
| 3516581 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.09e-01 | 86.7% | 47.4% |
| 3028533 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.51 | 44.0 | 2.70e-01 | 100.0% | 75.2% |
| 4281587 | 11.1.1.913 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29899 | 0.51 | 35.0 | 2.47e-01 | 80.0% | 38.5% |
| 4175205 | 241.7.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N | 0.50 | 35.0 | 2.77e-01 | 75.6% | 60.0% |