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MZ577098.1__QZI95082.1__Melnitz3EXVC039M_133__00127
Bact-VirMZ577098.1__QZI95082.1__Melnitz3EXVC039M_133__00127
Identity
- Accession:
- MZ577098 ↗
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Methylophilales_phage_Melnitz-3_EXVC039M
TaxID: 2832341
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-36
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.74 | 59.0 | 5.47e-01 | 100.0% | 75.5% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.70 | 58.0 | 5.27e-01 | 100.0% | 78.0% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.69 | 52.0 | 5.03e-01 | 100.0% | 95.7% |
| 1a9xB02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.68 | 57.0 | 3.49e-01 | 100.0% | 17.5% |
| 3holA03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.66 | 54.0 | 4.13e-01 | 100.0% | 94.4% |
| 2qyzA01 | 3.30.1490.160 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains | 0.66 | 55.0 | 4.87e-01 | 100.0% | 86.8% |
| 4lurA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.65 | 53.0 | 3.22e-01 | 100.0% | 37.9% |
| 3rosA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.64 | 54.0 | 3.25e-01 | 100.0% | 75.0% |
| 1p9bA03 | 3.90.170.10 | Alpha Beta › Alpha-Beta Complex › Adenylosuccinate Synthetase; Chain A, domain 3 › Adenylosuccinate Synthetase, subunit A, domain 3 | 0.64 | 46.0 | 3.08e-01 | 85.3% | 42.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.64 | 48.0 | 4.22e-01 | 100.0% | 60.6% |
| 2k13X00 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.64 | 52.0 | 3.83e-01 | 100.0% | 35.0% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.63 | 50.0 | 4.71e-01 | 100.0% | 97.9% |
| 2ff4A03 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.63 | 52.0 | 3.87e-01 | 100.0% | 92.9% |
| 5wjpA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 47.0 | 3.71e-01 | 100.0% | 92.6% |
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.62 | 53.0 | 4.84e-01 | 100.0% | 74.5% |
| 2h5eA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 50.0 | 3.29e-01 | 100.0% | 29.9% |
| 4i62A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 44.0 | 3.54e-01 | 100.0% | 92.5% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.59 | 47.0 | 4.34e-01 | 100.0% | 80.0% |
| 1j0hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 50.0 | 3.83e-01 | 100.0% | 43.4% |
| 4x9xA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 46.0 | 3.14e-01 | 100.0% | 22.1% |
| 2lvhA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.58 | 50.0 | 4.62e-01 | 100.0% | 91.1% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.57 | 48.0 | 4.71e-01 | 100.0% | 94.6% |
| 4dipH00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 43.0 | 3.17e-01 | 100.0% | 65.5% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.55 | 43.0 | 3.80e-01 | 100.0% | 59.0% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 46.0 | 3.35e-01 | 100.0% | 37.4% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 43.0 | 3.33e-01 | 100.0% | 55.4% |
| 4nzjA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 44.0 | 3.41e-01 | 100.0% | 41.4% |
| 3nkqA03 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.52 | 36.0 | 2.18e-01 | 91.2% | 12.6% |
| 2bayE00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 38.0 | 3.48e-01 | 100.0% | 59.3% |
| 5hkxA04 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.50 | 43.0 | 4.03e-01 | 100.0% | 97.7% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3278973 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.76 | 64.0 | 6.18e-01 | 100.0% | 95.0% |
| 5042394 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.75 | 53.0 | 3.94e-01 | 100.0% | 28.4% |
| 3277720 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.72 | 62.0 | 5.91e-01 | 100.0% | 92.5% |
| 3719535 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 56.0 | 3.16e-01 | 97.1% | 7.2% |
| 4380792 | 2007.1.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › GATase | 0.71 | 61.0 | 3.75e-01 | 100.0% | 17.6% |
| 4990489 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 57.0 | 5.15e-01 | 100.0% | 88.0% |
| 3389022 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.68 | 56.0 | 5.07e-01 | 100.0% | 74.0% |
| 3607261 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 55.0 | 5.09e-01 | 100.0% | 75.6% |
| 4960524 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 55.0 | 5.08e-01 | 100.0% | 86.7% |
| 4161260 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.65 | 53.0 | 4.98e-01 | 100.0% | 80.0% |
| 3469808 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 52.0 | 4.50e-01 | 100.0% | 86.7% |
| 4993851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 54.0 | 4.99e-01 | 100.0% | 86.7% |
| 4943977 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 54.0 | 5.23e-01 | 100.0% | 97.5% |
| 4593708 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.64 | 52.0 | 4.91e-01 | 100.0% | 80.0% |
| 4290243 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.64 | 53.0 | 4.77e-01 | 100.0% | 72.0% |
| 4015651 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 54.0 | 5.43e-01 | 100.0% | 97.1% |
| 3510104 | 355.1.1.2 ↗ | few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI | 0.63 | 52.0 | 4.56e-01 | 100.0% | 61.8% |
| 4026823 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 50.0 | 4.72e-01 | 97.1% | 90.9% |
| 4665551 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.63 | 51.0 | 4.80e-01 | 100.0% | 80.0% |
| 3245312 | 375.1.1.51 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_9 | 0.61 | 52.0 | 5.24e-01 | 100.0% | 97.1% |
| 3388528 | 7056.1.1.0 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan | 0.61 | 47.0 | 4.66e-01 | 100.0% | 90.0% |
| 3576729 | 375.1.1.146 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 | 0.61 | 41.0 | 3.55e-01 | 70.6% | 89.1% |
| 4190103 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.61 | 49.0 | 4.82e-01 | 100.0% | 94.7% |
| 4334910 | 101.1.1.107 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF134 | 0.60 | 51.0 | 3.50e-01 | 100.0% | 30.4% |
| 5015962 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.60 | 50.0 | 4.50e-01 | 100.0% | 72.0% |
| 3622513 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 48.0 | 4.15e-01 | 100.0% | 91.7% |
| 3708288 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 47.0 | 4.73e-01 | 100.0% | 85.7% |
| 3574854 | 375.1.1.267 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10, zf-CCCH_Mcm10 | 0.59 | 51.0 | 3.83e-01 | 100.0% | 41.2% |
| 4953501 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 46.0 | 4.52e-01 | 100.0% | 90.0% |
| 3233799 | 375.1.1.146 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 | 0.59 | 48.0 | 4.52e-01 | 100.0% | 75.0% |
| 3480425 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 47.0 | 4.75e-01 | 100.0% | 85.7% |
| 3809581 | 325.1.6.4 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase | 0.59 | 42.0 | 2.54e-01 | 85.3% | 54.1% |
| 5027281 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 49.0 | 4.18e-01 | 100.0% | 58.6% |
| 4085524 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 45.0 | 4.55e-01 | 94.1% | 97.1% |
| 4666101 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 50.0 | 4.61e-01 | 100.0% | 75.6% |
| 4099915 | 375.1.1.128 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_SprT | 0.58 | 45.0 | 4.49e-01 | 94.1% | 97.1% |
| 3596630 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 46.0 | 4.63e-01 | 100.0% | 85.7% |
| 3616359 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.58 | 48.0 | 3.72e-01 | 100.0% | 60.0% |
| 3633141 | 708.1.2.11 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › STEEP1 | 0.58 | 45.0 | 3.46e-01 | 100.0% | 99.0% |
| 4436757 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.58 | 41.0 | 2.68e-01 | 94.1% | 46.7% |
| 4961283 | 101.1.2.935 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C | 0.58 | 42.0 | 3.25e-01 | 100.0% | 33.9% |
| 3785488 | 7516.1.1.61 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Mannosyl_trans3 | 0.55 | 44.0 | 2.53e-01 | 97.1% | 22.6% |
| 5052735 | 375.1.1.64 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX | 0.55 | 46.0 | 4.64e-01 | 100.0% | 97.1% |
| 5016169 | 3769.1.1.0 ↗ | 0.51 | 36.0 | 3.43e-01 | 88.2% | 96.0% |